Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1399g00001 ATGGGTCTCTATGAATCTGAAGCAGAATTTGCTACTGATAGCAGCACTGAATGGAGCCTTATTTGGAGGTTGCAACTTGGAAACTTTGGCATTGGCGAAATGAATTCATCTTTAAAGGGGAGACTCAGAAACCTCATGAACCAGCACTGTGCCTATGAAGCAGAAGATGGGCAATGCTTAAGTCATCACGGTGACAAAACCAAGTCCTTAATTCTGCTTTCCTTTGGAGCGGCTTCCATGGAAGGCCAGAGCCACATTATGATGCCTCTGACCGATAATCCTCCCGCCACTTCCATGTACCGGCGATCTTCTTCTTCTTCATCAGGGCCTCCTCTGAGCGCCATAGACAGGTTCCTGTGGGGCCAACTCAGTCACCTTTCTGCTCTGTGGCCTAACAGTGACGACATAGAAGCAAGTTTAATGGATGGGTTTATAGCGAATAATGAAGCCCATCAGATGATGATACCTACAGTACTGAAGAAACAAGTGCAAGTTCTGGGGAAGAATAAAGCTACTGGTAATACAACGGTGGCAGGGAAGAGAATCAATAAGAAAGGGTCTTCTTCTGCGTCGTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGGTGAAGCTGGTGAATGAATACGGGGTGAGGAAATGGGCTCAGATAGCTGAGAATTTGGAGGGAAGAGCTGGGAAGCAATGCAGAGAGAGATGGCATAATCATTTACGTCCTGATATTAAGAAGGATAGTTGGAGTGAGGAAGAAGAGAAAATATTGGTAGAAACACATGCAAAGGTAGGGAATAGGTGGGCAGAGATAGCGAAGAGAATTCCAGGAAGGACAGAGAACGCAATCAAGAACCATTGGAATGCCACCAAAAGGAGACAGAACTCCAAGAGAAACCACAAATCTGCAAACAAAACCTCCAACAACAATGGAAGAAAGCCTCCTTCTTCCATTCTTCAAGATTACATCAAAAGCAAGACCCTCTCCAATAATAATAACCCCACCATTATTGGCAATGACGACCACCTTCAGGGCCCAACTGATGAAAACCAATTCAAGCTTGTGGTTTCTGATCATCAAGATCCCTCTCATGAACCTGTGATGGCTGAAGCATTTGATGATGAACTTCTCTTCATGCAACAGTTCTTCCAGGACAATTATCAGAATCAGCAGGTTCAGTCCACTTTGGATTTTTATCGAACAGATGCTGGGCATGAGGGGTATCTTCCTGAGCAGAGTGTTGCTGCTACCATTGGTGCTCCCGTGAAACAATACCATCATCATTCTGATCTGTTTCTGGCTCAGTTATTGAATGGGGTTGGTTATAATTCACCCATTTTCTGCTGTGATTATGGAAAAGATCAAAATTTCAACATGGGTTTGCAGGTAGAGGATGATCAGCAATCTTGGTATGAAGCAAAGAGAGAGATGGATTTGATGGAACTGGTTTCCTCTCAGCTTTCAACTAGTAGCAGCAATAGAAGCTTCTAG 1491 0.442 MGLYESEAEFATDSSTEWSLIWRLQLGNFGIGEMNSSLKGRLRNLMNQHCAYEAEDGQCLSHHGDKTKSLILLSFGAASMEGQSHIMMPLTDNPPATSMYRRSSSSSSGPPLSAIDRFLWGQLSHLSALWPNSDDIEASLMDGFIANNEAHQMMIPTVLKKQVQVLGKNKATGNTTVAGKRINKKGSSSASLIKGQWTDEEDRKLVKLVNEYGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEEKILVETHAKVGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSKRNHKSANKTSNNNGRKPPSSILQDYIKSKTLSNNNNPTIIGNDDHLQGPTDENQFKLVVSDHQDPSHEPVMAEAFDDELLFMQQFFQDNYQNQQVQSTLDFYRTDAGHEGYLPEQSVAATIGAPVKQYHHHSDLFLAQLLNGVGYNSPIFCCDYGKDQNFNMGLQVEDDQQSWYEAKREMDLMELVSSQLSTSSSNRSF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1399g00001 496 Gene3D - 247 317 - -
Pral1399g00001 496 Gene3D - 193 245 - -
Pral1399g00001 496 SMART sant 245 293 IPR001005 -
Pral1399g00001 496 SMART sant 193 242 IPR001005 -
Pral1399g00001 496 MobiDBLite consensus disorder prediction 301 318 - -
Pral1399g00001 496 CDD SANT 248 291 IPR001005 -
Pral1399g00001 496 ProSiteProfiles Myb-like domain profile. 189 240 IPR001005 -
Pral1399g00001 496 CDD SANT 197 240 IPR001005 -
Pral1399g00001 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 295 IPR017930 -
Pral1399g00001 496 FunFam Transcriptional activator Myb isoform A 193 246 - -
Pral1399g00001 496 PANTHER MYB PROTEIN-RELATED 170 316 - -
Pral1399g00001 496 MobiDBLite consensus disorder prediction 287 318 - -
Pral1399g00001 496 SUPERFAMILY Homeodomain-like 191 287 IPR009057 -
Pral1399g00001 496 Pfam Myb-like DNA-binding domain 197 255 - -
Pral1399g00001 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 244 IPR017930 -
Pral1399g00001 496 ProSiteProfiles Myb-like domain profile. 241 291 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1399g00001 Pral-Chr1399 607 4853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1399g00001 108 490 MYB Transcription Factor Family AT5G58850 39.860 3.25e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1399g00001 Myb_DNA-bind_6 2.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1399g00001 K09422 - cit:112499370 292.737