Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1397g00013 ATGACACGCCGACCAAAAATATCTTCGATACACTATGAATGGACTTATGATGTCTTCCTCAATTTTAGAGGTGAAGATACTCGTCATGGTTTCATAGGAACTCTAAATAAAGAGCTCGATCGAAAGGGAGTTCACACCTTCTTTGATGACAAAGAAATAGGAATAGGGGATGAAATTACACCAACGCTTCTCAAAGCAATCCAGGAATCTAGGATGGCCATTACTGTATTTTCTAGGGAGTATGCTTCCTCAACATTTTGCCTAAACGAACTAGTCCAAATCCATCAATGTATCAAGAAAAACGGTCGACTGGTTTGGCCAATCTTTTATGATGTGGAGCCTTCTGAAGTACGACATCAAAGAGGAAAATATGGACAAGCACTAGTTACACATCGACAAAACTCAAGGGCTGATGAAGAAAAAATGAAAAGTTGGAAGCATGCACTACATGAAATAGCTGATCTTAAAGGTTCATCATGTGATCCAAGGAAAAATTTTGAGCATGAACTCATTGAAAAGATTGTGAACGATATCTGTAGGACAATCAAAAGGGTCCCTCTCTATGTTGCCGAATATCCAGTTGGTTTGAATTCTCGTGTTCAAAAAATAAAATCTCTATTGCACCTTGAGTTAAATGATAAGGTCATCATGATAGGAATTTATGGAACTGGGGGAATGGGCAAAACAACAATCACACGTGCAGTGTATAATACAATTGCTGATAATTTTGATTATTTGTGCTTTCTTGATGATATCAAAGGAAGATCTGGAAAATATGGCCTAGAACAAGAGCAAGCCAGGATGCTTTCAAAACTCTTAGGACAGAAGATAGAAATTGAAGAGATTAATGAAGGAGTTGAGCTCATAAAACGAATGCTTAAAGATAAGAAAGTTCTTTTGATTCTTGATAATGTAGATGAACGAATGCAGTTACGAAAGTTAGCCGGGGCATGTGAATGGTTTGGTTGGGGGAGCAGGATCATTATAACAACACGAGATTTACATTTACTTAAGAGTCATGGGGTTGAAAGAAGATATGAAATGGAGGGATTAAATCATGAAGAGTCTCTTGAATTGTTAAGTTGGAATGCCTTTGGGAAGATGCAAGTTGATGATCCAAGGTACACAGAAGTTGTGAATGAGATGATAAGTTATTCCAGTGGTCTTCCCTTGGCCCTTGAAATATTAAGCCGTGATTTGTATGGTAAGAATGTAAATGAGTGGAAATCTATGTTGGATGGATGTAAAAGAATCCCTCATGGTAAGATTCAACAAATATTAGAAGTAAGCTATGAAGGCTTACAACAACATGAAAAAGAAGTTTTTCTTGATATTGCTTGCTTCTACAATGGTAGTGAATTGGAATATGTCAAAAAGATGGTGGGAATTGCTCATGATGTTGACCCAGATTATCATATTGGAGTGTTGGTAGACAAATGCCTTGTAAAGGTTTATGGGGCCGTCTTATTGAAATGCACGATCTAG 1485 0.3731 MTRRPKISSIHYEWTYDVFLNFRGEDTRHGFIGTLNKELDRKGVHTFFDDKEIGIGDEITPTLLKAIQESRMAITVFSREYASSTFCLNELVQIHQCIKKNGRLVWPIFYDVEPSEVRHQRGKYGQALVTHRQNSRADEEKMKSWKHALHEIADLKGSSCDPRKNFEHELIEKIVNDICRTIKRVPLYVAEYPVGLNSRVQKIKSLLHLELNDKVIMIGIYGTGGMGKTTITRAVYNTIADNFDYLCFLDDIKGRSGKYGLEQEQARMLSKLLGQKIEIEEINEGVELIKRMLKDKKVLLILDNVDERMQLRKLAGACEWFGWGSRIIITTRDLHLLKSHGVERRYEMEGLNHEESLELLSWNAFGKMQVDDPRYTEVVNEMISYSSGLPLALEILSRDLYGKNVNEWKSMLDGCKRIPHGKIQQILEVSYEGLQQHEKEVFLDIACFYNGSELEYVKKMVGIAHDVDPDYHIGVLVDKCLVKVYGAVLLKCTI 494
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral1397g00013 494 Gene3D - 350 435 IPR042197 -
Pral1397g00013 494 SMART till_3 15 155 IPR000157 GO:0007165
Pral1397g00013 494 PRINTS Disease resistance protein signature 217 232 - -
Pral1397g00013 494 PRINTS Disease resistance protein signature 292 306 - -
Pral1397g00013 494 PRINTS Disease resistance protein signature 386 400 - -
Pral1397g00013 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Pral1397g00013 494 Gene3D - 179 346 IPR027417 -
Pral1397g00013 494 Pfam TIR domain 16 180 IPR000157 GO:0007165
Pral1397g00013 494 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pral1397g00013 494 Gene3D - 12 178 IPR035897 -
Pral1397g00013 494 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 484 IPR044974 GO:0006952
Pral1397g00013 494 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Pral1397g00013 494 Pfam NB-ARC domain 199 432 IPR002182 GO:0043531
Pral1397g00013 494 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral1397g00013 Pral-Chr1397 173858 175510 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1397g00013 194 484 WRKY Transcription Factor Family AT5G45050 32.215 2.52e-36 141
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1397g00013 - - pcin:129312441 559.681