Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1397g00012 ATGACATGCCGACCAAAAATATCTTCGATACACTATGAATGGACTTACGATGTCTTCCTCAATTTTAGAGGTGAAGATACTCGTCATGGTTTCATAGGAACTCTAAATAAAGAGCTCAATCGAAAGGGAGTTCGCACCTTCTTTGATGACAAAGAAATAGGAATAGGGGATGAAATTACACCAAGGCTTCTCAAAGCAATCCAGGAATCTAGGATTGCCATTACTGTACTTTCTAAGGAGTATGCTTCCTCAACATTTTGCCTAAACGAACTAGTCCAAATCCATCAATGTATCAAGAAAAATGGTCGGCTGGTTTGGCCAATCTTTTATGATGTGGAGCCTTCTGAAGTACGACATCAAAGAGGAAAATATGGACAAGCACTAGTTACACATCGACAAAACTCAAGGGCTGATGAAGAAAAAATGAAAAGTTGGAAGCATGCACTACATGAAATAGCTCATCTTAAAGGTTCATCATATGATCCAAGGAAAGATTACGAACATGTACTCATTGAAGATACTGTGGACCACATCTTTAGGATAATTCGAAGGGCCCCCCTTGATGTTGCCGAATATCCAGTTGGTTTAAATTCTCGCTTGCAAAAAATAAACTCTCTATTGCAACTGGGGTCAAATGATGAGGTTATCATGATGGGAATTTATGGAACTGGGGGAATGGGTAAAACAACAATAACAAGTGCAGTGTATAATACAATTGCTGATAATTTTGATTATTGGTGCTTTCTTGATGATATCAAAGAAGGATCTGGAAAACATGGCCTAGAACAAGAGCAAGCCAGGATGCTTTCAAAACTCTTAGGAGAGAAGATAGAATTTGAAGAGATTAGTCAAGGAGTTAAGCTCATAAAACGAATGCTCAAAGATAAGAAAGTTCTTTTGATTCTTGATAATGTAGATGAACGAATGCAGTTACGAAAGTTAGCTGGGGCATGTGAATGGTTTGGTTGGGGGAGCAGGATCATTATAACAACAAGAGATTTACATTTACTCAAGAGTCATGGGGTTGAAAGAAGATATGAAATGGAGGGATTAAATCATGAAGAGTCTCTTGAATTGTTAAGTTGGAATGCCTTTGGGAAGATGCAAGTTGATGATCCAAGGTACACAGAAGTTGTGAATGAGGTGATGAGTTATTCCGGTGGTCTTCCCTTGGCCCTTGAAATATTAAGCCGTGATTTGTATGGTAAGAATGTAAATGAGTGGAAATCTATGTTGGATGGATGTAAAAGAATCCCTCATGGTAAGATTCAACAAATATTAGAAATTATCATATTGGAGTGTTGGTAG 1308 0.3792 MTCRPKISSIHYEWTYDVFLNFRGEDTRHGFIGTLNKELNRKGVRTFFDDKEIGIGDEITPRLLKAIQESRIAITVLSKEYASSTFCLNELVQIHQCIKKNGRLVWPIFYDVEPSEVRHQRGKYGQALVTHRQNSRADEEKMKSWKHALHEIAHLKGSSYDPRKDYEHVLIEDTVDHIFRIIRRAPLDVAEYPVGLNSRLQKINSLLQLGSNDEVIMMGIYGTGGMGKTTITSAVYNTIADNFDYWCFLDDIKEGSGKHGLEQEQARMLSKLLGEKIEFEEISQGVKLIKRMLKDKKVLLILDNVDERMQLRKLAGACEWFGWGSRIIITTRDLHLLKSHGVERRYEMEGLNHEESLELLSWNAFGKMQVDDPRYTEVVNEVMSYSGGLPLALEILSRDLYGKNVNEWKSMLDGCKRIPHGKIQQILEIIILECW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1397g00012 435 Gene3D - 187 344 IPR027417 -
Pral1397g00012 435 Gene3D - 10 186 IPR035897 -
Pral1397g00012 435 Pfam TIR domain 16 178 IPR000157 GO:0007165
Pral1397g00012 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 429 IPR027417 -
Pral1397g00012 435 PRINTS Disease resistance protein signature 217 232 - -
Pral1397g00012 435 PRINTS Disease resistance protein signature 386 400 - -
Pral1397g00012 435 PRINTS Disease resistance protein signature 292 306 - -
Pral1397g00012 435 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pral1397g00012 435 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Pral1397g00012 435 Pfam NB-ARC domain 202 414 IPR002182 GO:0043531
Pral1397g00012 435 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 429 IPR044974 GO:0006952
Pral1397g00012 435 SMART till_3 15 155 IPR000157 GO:0007165
Pral1397g00012 435 Gene3D - 350 431 IPR042197 -
Pral1397g00012 435 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1397g00012 Pral-Chr1397 144539 147112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1397g00012 5 397 WRKY Transcription Factor Family AT4G12020 26.582 1.07e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1397g00012 - - pcin:129316478 477.248