Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1397g00009 ATGATGCTCGGGGAGTCCCATCACGCTAATCCAACGGTTAACGTTCCTCCTTGGCCCCTCCACCTCGATGATTTGACCTCTGATATCTGTTCTCCTTACCCGGTCAGTGGTGTCTCCGTCGACTCAGATGGTAATGCCAGCACCGGCGATTACTCGCCGTTTTACCTACAGGATGCCCTGTCGGCGCTGCAGCGTTATCTCCCATCCAACGATGCCGACATCGACTCCGACTCTGATGTTGCGGGTCGGGATTCCGATGCTCCTGTCGATGCCTATTCCTGCGATCATTTCCGTATGTACGAGTTCAAGGTGAGAAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAATGCCCTTATGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGACCCGAGGAAGTATCACTATTCCGGCACTGCATGCCCTGATTTTCGCAAAGGGAGCTGTAAGAAGGGCGATGCTTGTGAGTTCGCTCATGGAGTATTTGAGTGCTGGCTTCACCCGTTTCGTTATCGTACGCAGCCGTGTAAGGACGGTACGAGCTGCAGGAGAAGGGTGTGCTTTTTTGCTCACACGCCGGAGCAACTGAGGATTCTGCCTCAGCAGAGTCCAAGGAGTGGTAACTCTGTAGATTCATACGACGGCTCTCCGTTCAGGCAGGTGATTGAATCTTCCTGCGCTAAAACTCTGCCTTTCATATCGTCTCCGTCTTCGATTTCACCTTCTGCTAGCTCCCCGACGGAGTCTCCTCCTGTGTCTCCGATGGCACAGTCTAGCCGGTCTGTTTGTACGAGCTCCATCAATGAGATGGCGGCTTCTCTGCGTAATTTGCAGCTTGGCAAGGCCAAGTCTTTGTCCTTATCCTCTTCTTGGAATGTTCCTATGGGGTCTCCCTGCTTCGGGTCTCCGAGAGGATCTATGCTCCGTCCCGGATTCTGCAGCCTCCCCACCACCCCTACACAGGCGCCAACTCGCGCCGGCGGCAGCTATTTTGATCTCTGGGATCAGAGCTGTGCGGAGGAGCCGGTGATGGAACGGGTCGAGTCCGGAAAGAACATAAGGGCAAAGATGTTCGAGAGACTGAGCAAAGAGAACTCGCTGGACAGGTCGGATCCGGGTTCATCGGGCGGAGGTCCGGATGTGGGGTGGGTTTCGGAGCTGGTGAAGTGA 1173 0.5541 MMLGESHHANPTVNVPPWPLHLDDLTSDICSPYPVSGVSVDSDGNASTGDYSPFYLQDALSALQRYLPSNDADIDSDSDVAGRDSDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPFRYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSGNSVDSYDGSPFRQVIESSCAKTLPFISSPSSISPSASSPTESPPVSPMAQSSRSVCTSSINEMAASLRNLQLGKAKSLSLSSSWNVPMGSPCFGSPRGSMLRPGFCSLPTTPTQAPTRAGGSYFDLWDQSCAEEPVMERVESGKNIRAKMFERLSKENSLDRSDPGSSGGGPDVGWVSELVK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1397g00009 390 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Pral1397g00009 390 MobiDBLite consensus disorder prediction 236 260 - -
Pral1397g00009 390 PANTHER UNKEMPT FAMILY MEMBER 52 390 IPR045234 -
Pral1397g00009 390 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Pral1397g00009 390 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Pral1397g00009 390 Gene3D - 94 162 - -
Pral1397g00009 390 MobiDBLite consensus disorder prediction 364 390 - -
Pral1397g00009 390 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Pral1397g00009 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1397g00009 Pral-Chr1397 51962 53744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1397g00009 76 285 C2H2 Transcription Factor Family AT5G12850 46.460 4.42e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral1397g00009 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1397g00009 - - qsa:O6P43_003933 616.305