Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1396g00001 ATGGCACCAAAAAGCCAGACTGAGTCATCCATTGGGAAATTCATTAACCGAGGAGCTTGGACTCCCGAGGAAGATCGAAAGCTTGCTCAGTGCATTGAACTTCATGGAGCCAAGAGGTGGAAGACCATTGCTCTTAAATCAGGTTTAAACAGGTGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTGATTCTTAGGCTTCACAAACTCCTCGGAAATAGGTGGTCGCTGATAGCTGGGAGACTTCCGGGACGAACAGACAATGAAATAAAAAACTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCGGGAAGAGGAGAAGAAGAAGAAGCCAAACACTGCAACCCCACAAGAAAGCACACCCCAACATACCTGGGATAGTGCTCTCGTGGAGAATGAGGAAGCCATTAAAGGAAATGGACCTGTGAACTCAGAAGTTAGCTTTGATGTGAATGAGTTCCTTGATTTCTCTCCCAAAGATGGATGCTTTCGTGAGTTGGATTGGATGACCAAGTATCTAGAACTAGATGAGTTTCCAGGGAGCAGTGGACAGTTTTGA 612 0.4461 MAPKSQTESSIGKFINRGAWTPEEDRKLAQCIELHGAKRWKTIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNREEEKKKKPNTATPQESTPQHTWDSALVENEEAIKGNGPVNSEVSFDVNEFLDFSPKDGCFRELDWMTKYLELDEFPGSSGQF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1396g00001 203 CDD SANT 74 115 IPR001005 -
Pral1396g00001 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Pral1396g00001 203 SMART sant 16 66 IPR001005 -
Pral1396g00001 203 SMART sant 69 117 IPR001005 -
Pral1396g00001 203 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pral1396g00001 203 CDD SANT 19 64 IPR001005 -
Pral1396g00001 203 MobiDBLite consensus disorder prediction 121 142 - -
Pral1396g00001 203 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 14 140 - -
Pral1396g00001 203 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Pral1396g00001 203 Gene3D - 73 144 - -
Pral1396g00001 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Pral1396g00001 203 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Pral1396g00001 203 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pral1396g00001 203 FunFam MYB-related transcription factor 16 69 - -
Pral1396g00001 203 Gene3D - 17 69 - -
Pral1396g00001 203 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1396g00001 Pral-Chr1396 4309 5993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1396g00001 14 139 MYB Transcription Factor Family AT5G52600 61.417 1.61e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1396g00001 Myb_DNA-binding 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1396g00001 K09422 - gmx:100799575 258.455