Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1392g00004 ATGAGCAGCAACACATCGGAGCCTGATGATGGCTCCTCGGCAGACTTAAACGGATATGCCTATTACTCCTTCGGACTATCCGTCGCAGTTGTTCTTCTCTTCGCCTTAATCACTTTCCTCTTGTACTTGTACGCCCGCAGAAACGCCACCATCAACACATCTCAACTATCACCAGATTTCACCCCCAGCTTTCGCTTACAGACCGTCGGAGATTCGAACCGTCTGCAAGTAGGTGTGGATGAAGCCACCCTGAAGAGTTATCCGGTGATGTTATACTCCGAAGCGAAGCGCCATCGGAAGTGTGATTTGGCGGCCACTTGCTCGATATGTTTGGGGGATTACAATGAAAGTGAGTGGCTGAGGGAGTTGCCGGATTGTGGTCACTTGTTTCACCGGAAGTGTATCGATATGTGGCTGAGGATGAGCCCTTCGTGTCCGCTGTGCCGGACCTCGCCGCTTCCGACGCCGGTTTCAACTCCGCTGGCCGAAGTTGCTGCCTTGGCAAGATCAGGGGCTTGA 519 0.5299 MSSNTSEPDDGSSADLNGYAYYSFGLSVAVVLLFALITFLLYLYARRNATINTSQLSPDFTPSFRLQTVGDSNRLQVGVDEATLKSYPVMLYSEAKRHRKCDLAATCSICLGDYNESEWLRELPDCGHLFHRKCIDMWLRMSPSCPLCRTSPLPTPVSTPLAEVAALARSGA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1392g00004 172 SUPERFAMILY RING/U-box 83 154 - -
Pral1392g00004 172 Pfam Ring finger domain 106 149 IPR001841 -
Pral1392g00004 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pral1392g00004 172 CDD RING-H2_EL5-like 107 149 - -
Pral1392g00004 172 SMART ring_2 107 148 IPR001841 -
Pral1392g00004 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Pral1392g00004 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 163 IPR045899 -
Pral1392g00004 172 FunFam E3 ubiquitin-protein ligase ATL6 67 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1392g00004 Pral-Chr1392 23585 24169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1392g00004 15 172 C3H Transcription Factor Family AT2G35910 48.734 2.19e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1392g00004 - - pcin:129304115 204.142