Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1392g00003 ATGAGCACCAACATAACGGAGGCGCACTCTAAGCCGCCGTTTAGCGGATACGCCTATTACTCCATCGGCCTATCCGTCGGAATTCTCCTTCTCTTCGCATTCATCACCGTGATCTTGTACTTCTTTTCCCGCAGAATCGCCATGAATTCGACACAACTGTCACGAGTTCGCAACGCAAGAGTTGGCTTACAGACCATTAGCGTCGGAGATGCTCCGGCGACGGACAGTCCGCGATTAGGTGTGGATGACGAGACGTTGAATAGTTATCCGGTGTTGTTATACTCAGAAGTGAAGCGTGACCGGAAAGGCGGCGCTGCCCGTGGTGGTGATTTTGCGGCAACTTGTTCGATATGTTTGGGGGATTTCAGTGACAGTGACAGGTTGAGGGAGTTGCCGGATTGTCATCACTTGTTTCATCAGAAGTGCATTGATATGTGGCTGAGGATGAACTCTTCGTGTCCGTTGTGTCGGACCTCACCGCTCCCGACGCCGGTTTCAACTCCGCTGGCCGAAGTTGCTCCCTTGGCAAGATCCTCAGGGGCTTGA 546 0.5275 MSTNITEAHSKPPFSGYAYYSIGLSVGILLLFAFITVILYFFSRRIAMNSTQLSRVRNARVGLQTISVGDAPATDSPRLGVDDETLNSYPVLLYSEVKRDRKGGAARGGDFAATCSICLGDFSDSDRLRELPDCHHLFHQKCIDMWLRMNSSCPLCRTSPLPTPVSTPLAEVAPLARSSGA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1392g00003 181 SUPERFAMILY RING/U-box 90 162 - -
Pral1392g00003 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Pral1392g00003 181 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pral1392g00003 181 SMART ring_2 115 156 IPR001841 -
Pral1392g00003 181 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 171 IPR045899 -
Pral1392g00003 181 Pfam Ring finger domain 114 157 IPR001841 -
Pral1392g00003 181 CDD RING-H2_EL5-like 115 157 - -
Pral1392g00003 181 FunFam E3 ubiquitin-protein ligase ATL6 71 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1392g00003 Pral-Chr1392 14930 15890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1392g00003 20 181 C3H Transcription Factor Family AT2G35910 46.296 7.65e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1392g00003 - - pcin:129304115 275.018