Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1392g00002 ATGAACCTCAACAGCGGCGCCGTCGCCTTCACTTTCGGTATTATTTTCCTAGTTCTATCCATCTGTTTTGCCTGCCTCCGCCTTCGCCGGCTCTCCGGCAACCCCACCATGTTCAATTTTCTTGCACGTCCTTCTGCCGCCGCCATACCAGTTGAAGCCGTCGAACCCCCCGCGGTAGCAGAACGTGGTCTCGATGACTCCATTATCAACAGCTTCCCCAAGCTCTCCTACTCTGAGATGAAGAAAAGCTCTTATAATAATCCCAACAATACTGAAGACCCTTCTAATAATTCCTCTTCATGTTCCATCTGCTTAGCAGATTATAAGGAAGAAGACATGTTAAGGTTGCTCCCTGATTGTGGCCATCTTTATCATCTTCGTTGCGTTGACCCATGGCTCAAGTTACACAACACTTGCCCTGTATGTCGAACTCGAACCTTCCCTTCTGTTAAAGCTGACGATGATCGGTCAAATAACTCCGTCGAGGGGGACATAGTTTGA 501 0.483 MNLNSGAVAFTFGIIFLVLSICFACLRLRRLSGNPTMFNFLARPSAAAIPVEAVEPPAVAERGLDDSIINSFPKLSYSEMKKSSYNNPNNTEDPSNNSSSCSICLADYKEEDMLRLLPDCGHLYHLRCVDPWLKLHNTCPVCRTRTFPSVKADDDRSNNSVEGDIV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1392g00002 166 SUPERFAMILY RING/U-box 100 149 - -
Pral1392g00002 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 151 IPR045899 -
Pral1392g00002 166 Pfam Ring finger domain 100 143 IPR001841 -
Pral1392g00002 166 FunFam E3 ubiquitin-protein ligase ATL6 53 149 - -
Pral1392g00002 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 148 IPR013083 -
Pral1392g00002 166 SMART ring_2 101 142 IPR001841 -
Pral1392g00002 166 CDD RING-H2_PA-TM-RING 105 143 - -
Pral1392g00002 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1392g00002 Pral-Chr1392 8035 8662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1392g00002 63 149 C3H Transcription Factor Family AT5G06490 55.172 3.75e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1392g00002 - - pcin:129319166 215.312