Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1386g00004 ATGAATCCTATATGCGAGTTATGTGTAGTAGTAAGAGCTGCGGTGTATTGCAAGTGTGATTCTGCGCGTCTCTGCTTGAATTGTGATGCTTATGTACACTCCGCCAACGCTTTGGCACGCAGGCATCCTCGTTCGCTGGTATGTGACAAATGCCATTCCCAACCAGCGATTGTCCACTGCATGGATGATAAAATCTCTCTGTGTCAGGGTTGTGATTGTAATCGAAATGTCTGCCTGGGATTGGGACACAGGCGTCTGATGTTGCTTAGTTACTCAGGTTGTCCCTCTTTTGCTGAGATGTCTAGGATCTGGCCTTTTGCTTTTGACTCTGCCTCAGGTGGTTCAGCCCATAGCTGGGGATCGTTTAATTCTTTGCCTAAGAACGGAAGCCAGTGTTTGGCGCAGCTAGATGACAATGATGCATCTTTCGGTGGCAGGTTGAGTGAACTTGAATCATGTGCAAAGTTTGAACCTAAGATGGCTCAATCTTCCATTCAAACAAATCCAAATCTCATGCCCTACTGCAGAGATCAACCAGTTTTATTTCCTCAAGGATCTAACCTCCTGCCAAAGATGCAGGGATGTCACGATACCAAGGATATTGGAATTTCTGAGGCTGATGACATCTGTGAAAGTCTTAACATGGATAGTGTTCAATTAAACTTTGACAGTGCTAATGAAATATTTGATTGCTCTCAAGATGCTGCTGGTTACCAGCTTGAGGATGGAGGATTGGACTCTCTATTAATGGAGAAAAACATATCAGTCACAGAATCTAATGGCCTTATTCAGAATTCCATGGAGGCATCATCATCAGTCCAGCAATGTTGTGTGGGTTTTCAATCATCATCCAGGGAAGGTGGATCAGGTTCTACGATCCAGAGGATGAACAACAATGCTAACTGTGCACTCATGGATACTAGCTGCAACAGAAAAATGAATCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCACTTTCATTACCCACCATCAATTGTGATAGTGACACTACCACTACGGATTTTCAGGATTGTGCCACTTCTGAATTCCAAGATTGCGTCTTATCACCAGCACTCTTGACCGTTGATACACCATGGGAATCAAAATTGGGGTGCCCACAAGCAAGGGAGAGAGCTAAATTGAGATACATTGAGAAAAAGAAGACTCGAACGTTTAGTAAACAAATAAGGTACGCGTCTCGCAAAGCAAGAGCTGATACTAGAAAACGTGTAAAAGGTAGATTTGTGAGAGCAGAAGAAGAATATGATGATGATCCTCTTGAGACAGGGAACTATTAA 1305 0.4337 MNPICELCVVVRAAVYCKCDSARLCLNCDAYVHSANALARRHPRSLVCDKCHSQPAIVHCMDDKISLCQGCDCNRNVCLGLGHRRLMLLSYSGCPSFAEMSRIWPFAFDSASGGSAHSWGSFNSLPKNGSQCLAQLDDNDASFGGRLSELESCAKFEPKMAQSSIQTNPNLMPYCRDQPVLFPQGSNLLPKMQGCHDTKDIGISEADDICESLNMDSVQLNFDSANEIFDCSQDAAGYQLEDGGLDSLLMEKNISVTESNGLIQNSMEASSSVQQCCVGFQSSSREGGSGSTIQRMNNNANCALMDTSCNRKMNLGFPQGQVHSSIPLSLPTINCDSDTTTTDFQDCATSEFQDCVLSPALLTVDTPWESKLGCPQARERAKLRYIEKKKTRTFSKQIRYASRKARADTRKRVKGRFVRAEEEYDDDPLETGNY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1386g00004 434 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pral1386g00004 434 ProSiteProfiles CCT domain profile. 378 420 IPR010402 GO:0005515
Pral1386g00004 434 CDD Bbox1_BBX-like 4 47 - -
Pral1386g00004 434 Pfam CCT motif 378 420 IPR010402 GO:0005515
Pral1386g00004 434 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Pral1386g00004 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1386g00004 Pral-Chr1386 19870 21856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1386g00004 1 428 C2C2-CO-like Transcription Factor Family AT3G21880 37.097 9.14e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral1386g00004 CCT 4.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1386g00004 - - gmx:100804738 496.893