Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1382g00002 ATGGGTCGAAGAAAATTAACGATGAAGACCCTCCAGAATAGGAATGCTCGCCGGGCTTTGTTTGAGAGGAGGAAGAAGGGTCTATTGAAGAAAGCTTCTGAACTTTCCACGCTCTGTGGGATTGATGCCTGTGTGATTATCTTCCCTCCTCCAGATTCTGAAAACCCTAAAGCTGAGACCTTTCCCCAGGATCCCACACAGGTGATTCGCAATCTGCAAGAGTATAGCGCCAAGAAGAAATGCCCCGAGAAACAAAGGAAGAACTACGATCTCCGTGAGTTCTTCACTGACAGGAAGAACCAGGTTGAAGCTGAGACCTCCAGAGTCCGTGAACAGAGATTGAAGATGTTGTGCCCAACCTGGGATGACAGCTTTGACAACATGGGAGAGGATCAGCTGATGATGTTTATTGCTGCGTTGGATTGTAAGCTCCAAGAGTGTGATCAGACAATTGGGTTGTTGAACGCAAGGAAATCAGAGATTCCTGTGGTTCCAGTGGGTTTGGATTTGTTGAACGATCATTGTTTGGAGATTCCTATCACTGTAATTCCTTCTTATCGTGATGTTTCAGATGAAACCCTCCTGGACCTGGGTTTTATGGAGAATATGAGTGATGAAGCCAATGTTGTATCTGATCCAATAAGGCGGCTTGTTGGTGATAATAACACTGAACTGATGGAATCTTGCTCTCTTCATGCCCAGATGCTTCGGTTTGATTCAACTTGGGATGACAGCTTCAAGGACCAGCAGGGGATGTTTCATGGTTCAATATTAGATTCTATCCTTCAAGAGTGTAATTGGCATATGACTGACTTGTTCCACACAGGTCTTTAG 834 0.4496 MGRRKLTMKTLQNRNARRALFERRKKGLLKKASELSTLCGIDACVIIFPPPDSENPKAETFPQDPTQVIRNLQEYSAKKKCPEKQRKNYDLREFFTDRKNQVEAETSRVREQRLKMLCPTWDDSFDNMGEDQLMMFIAALDCKLQECDQTIGLLNARKSEIPVVPVGLDLLNDHCLEIPITVIPSYRDVSDETLLDLGFMENMSDEANVVSDPIRRLVGDNNTELMESCSLHAQMLRFDSTWDDSFKDQQGMFHGSILDSILQECNWHMTDLFHTGL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1382g00002 277 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral1382g00002 277 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Pral1382g00002 277 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Pral1382g00002 277 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Pral1382g00002 277 PANTHER MADS BOX PROTEIN 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1382g00002 Pral-Chr1382 7948 8781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1382g00002 1 146 Type I MADS-box Gene Family AT5G55690 31.788 1.18e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1382g00002 SRF-TF 6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1382g00002 - - pcin:129304854 380.178