Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1382g00001 ATGGGTCGAAGAAAATTAACGATGAAGACCCTCCAGAACAGGAATGCTCGCCGGGCTTTGTTTGAGAGGAGGAAGAAGGGTTTATTGAAGAAAGCTTCTGAACTTTCCACGCTCTGTGGGATTGATGCCTGTGTGATAATCTTCCCTCCTCCAGATTCTGAAAACCCTAAAGCTGAGACCTTTCCCCAAGATCCCACACAGTTGATTCGCAATCTGCAAGAGTATAGCGCCAAGAAGAAATGCCCCGAGAAACAAAGAAAGAACTACGATCTCCGTGAGTTCTTCACTGATAGGAAGAACCAGGTTGAAGCTGAGACCTCCAGAGTCCGTGACCAGAGATTGAAGATGTTGTGCCCCACCTGGGATGACAGCTTTGACAACCTGGGAGAGGATCAGCTGATGATGTTTATTGCTGCGTTGGATTGTAAGCTCCAAGAGTGTGATCAGACAATTGGGTTGTTGAACGCAAGGAAATCAGAGATTCCTGTGGTTCCAGTGGGTTTGGATTTGTTGAACGATCATTGTTTGGAGATTCCTATTACTGTAATTCCTTCTTATCGTGATGTTTCAGATGAAACTCACCTGGACCTGGGTTTTATGGAGAATATGAGTGATGAAGGCAATGTTCTATCTGATCCAATAAGGCGACTTGTTGGTGATAGTAACACTGACCTGATGGAATCTTGCTCTCTTCAGGCCCAGATGCTTCAGTCTGGTTCAACTTGGGATGACAGCTTCAAGGACCTGGTAGTAATAGAGAAGCAGCAGGGGATGTTTCATGGTTCAATTTTAGATTCTATCCTTCAAGAGTGTGATTGTCACATGACTGACTTGTTCCACACAGGTCTTTAG 852 0.4495 MGRRKLTMKTLQNRNARRALFERRKKGLLKKASELSTLCGIDACVIIFPPPDSENPKAETFPQDPTQLIRNLQEYSAKKKCPEKQRKNYDLREFFTDRKNQVEAETSRVRDQRLKMLCPTWDDSFDNLGEDQLMMFIAALDCKLQECDQTIGLLNARKSEIPVVPVGLDLLNDHCLEIPITVIPSYRDVSDETHLDLGFMENMSDEGNVLSDPIRRLVGDSNTDLMESCSLQAQMLQSGSTWDDSFKDLVVIEKQQGMFHGSILDSILQECDCHMTDLFHTGL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1382g00001 283 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral1382g00001 283 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Pral1382g00001 283 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Pral1382g00001 283 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
Pral1382g00001 283 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1382g00001 Pral-Chr1382 2970 3821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1382g00001 1 146 Type I MADS-box Gene Family AT5G55690 31.126 3.98e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1382g00001 SRF-TF 6.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1382g00001 - - pcin:129304854 379.022