Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1380g00002 ATGGTTAACAGTGGGGTGTGCAGTCTCCGTACGCGTTGCCTGCGTTTTCCTCACCTCCCGGAGACACCGCTTTTTCCGCCACTTCGTTTCTCACTTACTTGCCGGTGCCGGCGGGCTCTGGTCACCGCGTCTGCTGTCTCTGAAACGTACAAGAAGAAGGAGACTAGAGAGAAAGTCATTGTGATTTCTGGACCTACTGGCGCCGGTAAAAGTCGGCTTGCATTGGAACTCGCTAAGCGGCTCAATGGAGAAATTGTCAGTGCCGACTCTGTCCAGGTGTACCAAGGTCTTGATGTTGGATCAGCTAAACCCTCCCCAAATGATAGAAAGGAGGTAAAACATCATCTGATTGACATATTGCATCCATCTAAAGACTACTCAGTTGGACAATTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATCCTTGACAATGGCCGTGTTCCCATAGTTGTTGGGGGAACTGGGTTGTATTTACGATGGTTCATATATGGAAAACCAGATGTTCCCAAAGCTTCTGCATATGTCAAATCCAAAGTGTATTCAGAGTTAGCTGAACTACAGAAAAATGAAGATTGGGATGCTGCTGTGCAGTTGGTGGTAGATGCAGGTGATGCAAAGGCCCAAACTTTAGCAGTGAATGATTGGTATCGATTACGGCGTAGCCTAGAGATTATCAAATCTAGTGGATCACCTCCTTCTGCTTTTCGGGTGCCGTATGATTCTTTCAGGGAACTGGGTGATTCTAGTGATACCAATGGTTTTGAATCTTCCGATGTCAAAATTTCTGGCAATTCAGTGGAAGATTCCAAGTTCTCAGATTTGCCTTATGAGTTCATATGCTTTTTCCTTTCTAGTCAGAGGCTTGACCTATATAAAACAATCGACCAGCGGTGTGAAGATATGCTATTAGGAAGGGATGGGATTCTGTCTGAGGCTCGATGGCTTCTAAAGTTGGGTCTTCATCCCAACTCCAATTCTGCAACACGAGCAATCGGCTATAGACAAGCTATGGAATACCTACTTAGATGCCAACGACATGGAGGGCAGAGTTCAGCTGAAGAATTTTACAATTTTTTGTCTGAATTTCAAAAAGAAACTAGGAATTTTGCAAAAAGACAATTGACATGGTTTCGCAATGATCATATTTACCACTGGCTCGATGCTTCCAAGCCACTGGATGCAATTATTGAATTCATTGACAATGCATATCATGATTGGAGTGGAAAGCTCGTTGTGCCTGAACACCTTAGAATGTCTAAAGATATATCTAATCGCCAAGAAGCTGCTCAACTTAAGTCTTACCGCACAAAAAATAGGCATTTCATGAAAGATGAAGATTGTTCTCGTATTCTGGAGTGGATAAGAAAGACTGAAGAATGA 1383 0.4346 MVNSGVCSLRTRCLRFPHLPETPLFPPLRFSLTCRCRRALVTASAVSETYKKKETREKVIVISGPTGAGKSRLALELAKRLNGEIVSADSVQVYQGLDVGSAKPSPNDRKEVKHHLIDILHPSKDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASAYVKSKVYSELAELQKNEDWDAAVQLVVDAGDAKAQTLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRELGDSSDTNGFESSDVKISGNSVEDSKFSDLPYEFICFFLSSQRLDLYKTIDQRCEDMLLGRDGILSEARWLLKLGLHPNSNSATRAIGYRQAMEYLLRCQRHGGQSSAEEFYNFLSEFQKETRNFAKRQLTWFRNDHIYHWLDASKPLDAIIEFIDNAYHDWSGKLVVPEHLRMSKDISNRQEAAQLKSYRTKNRHFMKDEDCSRILEWIRKTEE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1380g00002 460 Gene3D - 56 451 IPR027417 -
Pral1380g00002 460 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 57 393 IPR039657 -
Pral1380g00002 460 Hamap tRNA dimethylallyltransferase [miaA]. 59 398 IPR018022 GO:0008033
Pral1380g00002 460 FunFam tRNA dimethylallyltransferase 9 167 238 - -
Pral1380g00002 460 Pfam IPP transferase 92 381 - -
Pral1380g00002 460 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 59 236 IPR018022 GO:0008033
Pral1380g00002 460 Gene3D - 168 238 - -
Pral1380g00002 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1380g00002 Pral-Chr1380 17517 24041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1380g00002 62 341 C2H2 Transcription Factor Family AT2G27760 25.000 5.99e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1380g00002 K00791 - qsa:O6P43_029165 693.73