Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00050 ATGGACATCGACTCCTCACACACCTCCAATTGGCTTTATGATTATGGCTTCGATGTCTCTGTTGCCGGAGCTGAATTCCCGGTCGTCCCTTCCGGCGGTTTCAACTGGGTGTCTCCTGCTTTCCACGCTTCTTCCGATACGAGCTTGGACCTGGAATACGCGCTGGACAATTCAACTTTCCTGGAAAATGGCCCTTCAAAGCGGTTGAAGACTGAATCATGTGCGCCTGGCTCCAAGGCATGCCGTGAGAAACTGCGGAGGGATAGACTTAATGAGAGGTTCCTCGAATTGAGTTCTATCCTGGAGCCTGGTAAGCTGCCCAAGACGGATAAGGCTGCTATCTTAAGTGATGCAGTTCGAATGTTAACAGAACTACGAAGTGAAGCCCAGAAGCTGAAGGAAACAAATGATGAATTGCTGGAAAAGATTAAGGAACTGAAGGCAGAGAAGAATGAGCTTCGAGATGAGAAGAATAGGCTGAAGATGGATAAAGAAAAGCTGGAGCGGCAGGTCAAGGGAATAAATGCACAGCCAACCTATCTTTCTCACCCGTCTGCTGCATTCACTGCTCAAGGCCAAACTGCCAGCCACAAGCTGATACCTTTTGTTGGCTATCCAGGAATCGGCATGTGGCAGTTTTTGCCGCCTGCTGCCGTTGATACATCTCAGGATCACCTGCTTCGCCCTCCTGTCGCTTAA 699 0.495 MDIDSSHTSNWLYDYGFDVSVAGAEFPVVPSGGFNWVSPAFHASSDTSLDLEYALDNSTFLENGPSKRLKTESCAPGSKACREKLRRDRLNERFLELSSILEPGKLPKTDKAAILSDAVRMLTELRSEAQKLKETNDELLEKIKELKAEKNELRDEKNRLKMDKEKLERQVKGINAQPTYLSHPSAAFTAQGQTASHKLIPFVGYPGIGMWQFLPPAAVDTSQDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00050 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 139 IPR036638 GO:0046983
Pral1379g00050 232 CDD bHLH_AtILR3_like 79 154 - -
Pral1379g00050 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Pral1379g00050 232 SMART finulus 80 131 IPR011598 GO:0046983
Pral1379g00050 232 Coils Coil 115 177 - -
Pral1379g00050 232 Gene3D - 67 123 IPR036638 GO:0046983
Pral1379g00050 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 124 177 - -
Pral1379g00050 232 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Pral1379g00050 232 PANTHER BHLH TRANSCRIPTION FACTOR 5 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pral1379g00050 232 FunFam Transcription factor bHLH104 77 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00050 Pral-Chr1379 255892 258798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00050 5 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 53.814 4.82e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1379g00050 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00050 - - gmx:100806838 307.76