Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00045 ATGAATCCTATATGCGAGTTATGTGTAGTAGTAAGAGCTGTGGTGTATTGCAAGTGTGATTCTGCGCGTCTCTGCTTGAATTGTGATGCTTATGTACACTCCGCCAACGCTTTGGCACGCAGGCATCCTCGTTCTCTGGTATGTGACAAATGCCATTCCCAACCAGCGATTGTCCACTGCATGGATGATAAAATCTCTCTGTGTCAGGGTTGTGATTGTAATCGAAATGTCTGCCTGGGATTGGGACACAGGCGTCTGATGTTGCTTAGTTACTCAGGTTGTCCCTCTTTTGCTGAGATGTCTAGGATCTGGCCTTTTGCTTTTGACTCTGCCTCAGGTGGTTCAGCCCATAGCTGGGGATCGTTTAATTCTTTGCCTAAGAACGGAAGCCAGTGTTTGGCGCAGCTAGATGACAATGATGCATCTTTCGGTGGCAGGTTGAGTGAACTTGAATCATGTGCAAAGTTTGAACCTAAGATGGCTCAATCTTCCATTCAACCAAATCCAAATCTCATGCCCTACTGCAGAGATCAACCAGTTTTATTTCCTCAAGGATCTAACCTCCTGCCAAAGATGCAGGGATGTCACGATACCAAGGATATTGGAATTTCTGAGGCTGATGACATCTGTGAAAGTCTTAACATGGATAGTGTTCAATTAAACTTTGACAGTGCTAATGAAATATTTGATTGCTCTCAAGATGCTGCTGGTTACCAGCTTGAGGATGGAGGATTGGACTCTCTATTAATGGAGAAAAACGTATCAGTCACAGAATCTAATGGCCTTATTCAGAATTCCATGGAGGCATCATCATCAGTCCAGCAATGTTGTGTGGGTTTTCAATCATCATCCAGGGAAGGTGGATCAGGTTCTACGATCCAGAGGATGAACAACAATGCTAACTGTGCACTCATGGATACTAGCTGCAACAGAAAAATGAATCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCACTTTCATTACCCACCATCAATTGTGATAGTGACACTACCACTACGGATTTTCAGGATTGTGCCACTTCTGAATTCCAAGATTGCGGCTTATCACCAGCACTCTTGACCGTTGATACACCATGGGAATCAAAATTGGGGTCTGCATGCCCACAAGCAAGGGAGAGAGCTAAATTGAGATACAATGAGAAAAAGAAGACTCGAACGTTTAGTAAACAAATAAGGTACGCGTCTCGCAAAGCAAGAGCTGATACTAGAAAACGTGTAAAAGGTAGATTTGTGAGAGCAGAAGAAGAATATGATGATGATCCTCTTGAGACAGGGAACTATTAA 1311 0.4348 MNPICELCVVVRAVVYCKCDSARLCLNCDAYVHSANALARRHPRSLVCDKCHSQPAIVHCMDDKISLCQGCDCNRNVCLGLGHRRLMLLSYSGCPSFAEMSRIWPFAFDSASGGSAHSWGSFNSLPKNGSQCLAQLDDNDASFGGRLSELESCAKFEPKMAQSSIQPNPNLMPYCRDQPVLFPQGSNLLPKMQGCHDTKDIGISEADDICESLNMDSVQLNFDSANEIFDCSQDAAGYQLEDGGLDSLLMEKNVSVTESNGLIQNSMEASSSVQQCCVGFQSSSREGGSGSTIQRMNNNANCALMDTSCNRKMNLGFPQGQVHSSIPLSLPTINCDSDTTTTDFQDCATSEFQDCGLSPALLTVDTPWESKLGSACPQARERAKLRYNEKKKTRTFSKQIRYASRKARADTRKRVKGRFVRAEEEYDDDPLETGNY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00045 436 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 425 - -
Pral1379g00045 436 Pfam CCT motif 380 422 IPR010402 GO:0005515
Pral1379g00045 436 CDD Bbox1_BBX-like 4 47 - -
Pral1379g00045 436 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pral1379g00045 436 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Pral1379g00045 436 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00045 Pral-Chr1379 238476 240490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00045 1 430 C2C2-CO-like Transcription Factor Family AT3G21880 36.952 1.95e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral1379g00045 CCT 1.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00045 - - gmx:100804738 511.531