Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00030 ATGCCTGCCGGTATGATGATTCCGGCGAGAAATATGACCTCGGTGATGGGAAGGAACGGCAACGTTGGTGGTTTTGGATCATCCTCAGGTCTCACTCTCGGCCAGCCAAACATGATGGAAGGTCAGCTCCTCCCATTGGACATGGCTCCCAACACCTCCGAGAGCGATGTCCCCCGCATCCGAGAAGACGACTTCGACAGTGCCACCAAGTCCGGCAGTGAAAACCAGGAAGGCGCCTCTGGCGACGACCATGATCCCCGTCCCAAGAAGAAGCGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCGCATCCAGATGACAAGCAGAGAAAGGAACTGAGCCGGGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACCCAACATGAGCGGCAAGAGAACTCACAACTTAGAGCCGAAAATGAGAAGCTTCGAGCGGACAACATGAGGTATAGGGAAGCTCTTAGCAATGCCTCATGTCCAAATTGCGGTGGACCAACCGCTGTAGGTGAAATGTCTTTTGATGAGCATCATTTGAGGATGGAAAATGGTCGCCTACGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTATCCACTGCTTTCCCCAACAAGTATTCCTCCGCGGCCATTGGAACTTGGTGTAAGTGGTTTTGGTGGGGACGTATATGGAGGTGGAGATGTTGTTAGGTCTATCAGCGGGCCTAGCGAAGCCGATAAGCCAATGATAATAGAGCTAGCTGTGGCTGCCATGGAAGAGCTGGTGAGGATGGCACAAATGGGTGAGCCATTATGGATGACCACTCTTGACGGAACTACCACAGTCCTTAACGAGGATGAATATATCAGAATTTTCCCCCGTGGCATTGGTCCAAAACCTGCTGGATTCAAGTGTGAAGCTTCTAGAGAAACTGCTGTTGTTATCATGAACCATATCAGTCTTGTTGAGATCCTCATGGATGTGAATCAATGGTCCACGGTGTTCTCGGGTATGGTCTCAAGAGCAATGACCCTGGAAGTATTATCGACGGGGGTGGCTGGGAACTACAATGGAGCCTTGCAAGTGATGACGGCAGAGCTACAAGTACCTACACCTCTAGTGCCAACTCGAGAGAGTTATTTCGTAAGATATTGCAAACAGCATGGGGAAGGGACATGGGCGGTGGTGGATGTATCGTTGGATAATTTGCGGCCTAGCCCTTCAGTGAGATGTAGAAGAAGGCCTTCCGGCTGCTTAATTCATGAAATGCCTAACGGCTACTCAAAGGTGACTTGGGTTGAGCATGTGGAGGTGGACGATAGAGGAGTTCATGATCTATACAAGCAGCTCGTCAGCTGTGGACATGCTTTTGGGGCAAAACGTTGGGTGGCTACTTTGGATCGACAATGCGAAAGGCTTGCTAGTTCCATGGCAACAAATATTCCCCCCGGTGATGTTGGGGTGATAACGAATCAAGAAGGGAGGAAGAGCATGCTGAAACTGGCAGAGAGAATGGTGATGAGCTTTTGTGCAGGGGTGAGTGCTTCTACTGCTCACACCTGGACTACACTGTCTGGAACTGGAGCTGATGACGTAAGGGTAATGACCCGTAAGAGTGTGGATGACCCGGGAAGGCCTCCCGGCATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCTAATAGAGTTTTTGATTTCCTCCGTGATGAGAATTCCAGAAATGAGTGGGATATTCTTTCGAATGGTGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGCCAGGACACAGGGAATTGTGTATCTCTACTTCGGGTAAATAGTGCGAATTCTAGCCAAAGCAATATGTTAATATTGCAAGAAAGCTGCAGAGACACAACGGGGTCGTTTGTGGTATATGCACCAGTGGATATAGCGGCCATGAACCTGGTTCTAAATGGAGGGGACCCTGATTACGTGGCCCTTCTTCCTTCTGGATTTGCTATACTTCCAGATGGAACCACGGGACACGGTGGATCTCTCTTGACTGTTGCCTTCCAAATTTTGGTTGACTCAGTTCCCACAGCGAAACTTTCTCTTGGATCCGTTGCCACGGTCAATAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTTCTTTATCCTGTGAAGCTGCCTAA 2235 0.4908 MPAGMMIPARNMTSVMGRNGNVGGFGSSSGLTLGQPNMMEGQLLPLDMAPNTSESDVPRIREDDFDSATKSGSENQEGASGDDHDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAVGEMSFDEHHLRMENGRLREEIDRISAIAAKYVGKPVVNYPLLSPTSIPPRPLELGVSGFGGDVYGGGDVVRSISGPSEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGTTTVLNEDEYIRIFPRGIGPKPAGFKCEASRETAVVIMNHISLVEILMDVNQWSTVFSGMVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPSPSVRCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSCGHAFGAKRWVATLDRQCERLASSMATNIPPGDVGVITNQEGRKSMLKLAERMVMSFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCRDTTGSFVVYAPVDIAAMNLVLNGGDPDYVALLPSGFAILPDGTTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00030 744 Gene3D - 75 164 - -
Pral1379g00030 744 SUPERFAMILY Bet v1-like 513 736 - -
Pral1379g00030 744 SMART HOX_1 88 151 IPR001356 GO:0003677
Pral1379g00030 744 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Pral1379g00030 744 SMART START_1 274 494 IPR002913 GO:0008289
Pral1379g00030 744 Pfam START domain 275 494 IPR002913 GO:0008289
Pral1379g00030 744 MobiDBLite consensus disorder prediction 64 98 - -
Pral1379g00030 744 FunFam Homeobox-leucine zipper protein HDG1 75 163 - -
Pral1379g00030 744 CDD homeodomain 90 148 IPR001356 GO:0003677
Pral1379g00030 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 739 IPR042160 -
Pral1379g00030 744 Coils Coil 146 173 - -
Pral1379g00030 744 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Pral1379g00030 744 CDD START_ArGLABRA2_like 269 493 - -
Pral1379g00030 744 FunFam Homeobox-leucine zipper protein GLABRA 2 274 493 - -
Pral1379g00030 744 ProSiteProfiles START domain profile. 265 497 IPR002913 GO:0008289
Pral1379g00030 744 Gene3D - 305 478 IPR023393 -
Pral1379g00030 744 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Pral1379g00030 744 SUPERFAMILY Bet v1-like 267 496 - -
Pral1379g00030 744 SUPERFAMILY Homeodomain-like 77 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00030 Pral-Chr1379 175652 180637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00030 60 744 Homeobox Transcription Factor Family AT1G05230 81.609 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1379g00030 START 2.8e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00030 K09338 - tcc:18610083 1311.21