Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00027 ATGAAACACTTCATGGCTGTGCCTCGAATAATTATGATTTGGACAATCCTTTGCGGTCTTGCTCGTTGTCAAAGGCCAGCGTCTGTGAATATTGGTGCGGTTTTCACATTTGATTCGGTCATAGGTAAAACAGCAAAGGTGGCGATGCAAATGGCTGTCGATGACGTCAATGCAGACCCCGTAGTTCTCAATGGGACGAAACTGAACTTGATAATGGAGGATGCCAGTTGCAACGTCTTCTTGGGATCGATTGGAGCGTTGCGTGCACTTGAGCAAGGGGTTGCGGCAGTAATTGGTCCACAATCATCTTCCATCTCTCACGTGATTTCTCAAATTGCCAATGGTCTCCAAGTGCCTCAAGTTTCCTATGCTGCCACTGATCCAACCCTGTCGGCCCTTCAATTTCCTTTCTTTTTTCGTTCTATACCAAGTGACTCTGAGCAAATGACTGCAGTGGCTGATTTAATTGACTTCTATGGATGGAAAGAGGTCATTGCGGTCTTCTTGGATGATGATTACGGGAGAAATGGAATATCTGCTCTGGCTGATGAGCTTGAAAATCGGAGGATAAAGATTTCTAATAAGTTGGCTATTAGCATTAAGTTTGATCCGAATGAAATCACTAACTTGCTCAATCATTCCAAAGTGTTTGGTCCTCGTGTGTATGTTGTTCACGTCAACCCAGATCCTAGATTGAGAATTTTTAACATAGCCTACAAACTGAAAATGATGTCTAGTGACTTTGTCTGGCTTGCCACTGATTGGCTTTCTACTACTCTAGAATCGTTCTCCCCACAGAATCAGACCCCTCTGAGTGTTGTGCAAGGGGTGGTTGGACTTCGTCCGCACATTCCAGATTCTTCCCAGAAAAGATCTTTTGTTTCTCGGTGGATAAAAGTGCAGAATGAAAGCGCAGCAAGCATCGGGTTGAACCATTATGGATTTTATGCATACGATTCAATTTGGGCTGTTGCACATGCTATTGACAAGTTTATTGAAATATACAAGAATATTACGTTCTCGGTCAATAACAGCTCGAGGCTATTGAATAAAGAAGCAGCTTATATACGTCTTGACGAGCTCAAAGTCTTCACAGGTGGATCTGATCTGGTCAACATATTATTGCAGTCAAATTATACTGGTGTGAGCGGCCACCTTCAATTTAGTCCTGACAGGAATATTGTTAGTAGTGGCTATGAGGTTATCAATATCAATCAGATGGAAATTACCAGGGTTGGATATTGGTCTAATGCTTTTGGATTTTCAGTGGTACCACCTGATCAAACTCTTGAGAAGAAAGGACGTGGTAGGGTTCCCCAAGATCAGAAGCTTAACACTATCACTTGGCCAGGTGGAATGACAGCAAAGCCACGTGGCTGGGTGATTGCTGATGACGCAAGACCACTGAGGATTGGAGTTCCCAAGAGAGCAAGTTTTGTTGAGTTCGTCACTGAGCTGCCTGGTAATCATCAAATTCAAGGGTACTGCATTGATATTTTCAAGAAAGCACTGGAGTTTGTACCATATGATGTTCCTTATGTATTTAAGCCTTTCGGGAATGGTCAATCAAATCCCAATTATGATGCGCTTGTGGAGACTGTTGCTGACAATGTATTTGATGCGGTAGTTGGAGACATAGCAATTGTGACAAATCGTACAAGGATTGTGGATTTTTCTCAGCCTTTCACATTAACTGGTCTTGTTATAGTGGCTCCAATCAAGAAATCAAAATCAAGTGCTTGGGTATTTCTCAAACCATTTACGGCAGATATGTGGTTTGTCACTGCAGCTTCATTTATATTGGTTGGAATAGTTATATGGATCCTTGAGCACCGAATCAATGATGATTTCCGCGGTCCTCCTCAGAGGCAAATTGTGACGATGTGTATGTTCAGCCTCTCAACCCTGTTTAAGACAAATCAGGAAAATACAGTAAGCTCACTTAGTCGGATGGTGATGATAATATGGCTTTTTCTGTTGATGGTGATCACTGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAACTTTCATCGTCCATCACTGGCATCGATAGCTTGATTGCAAGTAACTTGCCTATAGGGTACCAAGTAGGATCATATGCTTTCAACTATCTGACAGAGAGTCTTTATGTGCAAAGATCAAGACTTGTTGCTCTAGGTAACCCTGAGGAATATGCAAGAGCTCTGCAGCTAGGGCCTTCTCTTGGAGGGGTGGCAGCTATAATTGATGAGCTTCCATACATAGAGTTATTTCTGTCAACACAAACTGATTTTGGTATTATTGGACGACCATTTGCCAGAAGCAGTTGGGGATTTGCATTTCAAAGGGAGTCTCCTCTCGCCCTTGATATGTCTACGGCTTTTGAAACTCAATGAAAACGGAGAGCTTCAAAGATACGAGAGCGGTGGTTCTGCAAGATGGGTTGTCCTGAAGAAAGGAGAAGCCACTCCGAGCCTAACCAACTTCGCTTGGTCAGCTTCTGGGGTCTATATCTCTCATGTGGTATCGTCACTCTCGCTTCTTTACTGGTGTATATTCTGCGAACAATTCGCCAATACATCCGATACAAGCAAAGGCAAAAAGATATCCCTTCTGGATCCCGTGAAGCATCTGGTGGTAAATGTTCCCACGTCATCTATAGCTTTTTGAATTTCATTGATAAGAAGGAAGAAGCCATCAAGAAAATGTTCACTCACTGTGAGAATCCAGAACAGCAGCCGACCTGA 2739 0.429 MKHFMAVPRIIMIWTILCGLARCQRPASVNIGAVFTFDSVIGKTAKVAMQMAVDDVNADPVVLNGTKLNLIMEDASCNVFLGSIGALRALEQGVAAVIGPQSSSISHVISQIANGLQVPQVSYAATDPTLSALQFPFFFRSIPSDSEQMTAVADLIDFYGWKEVIAVFLDDDYGRNGISALADELENRRIKISNKLAISIKFDPNEITNLLNHSKVFGPRVYVVHVNPDPRLRIFNIAYKLKMMSSDFVWLATDWLSTTLESFSPQNQTPLSVVQGVVGLRPHIPDSSQKRSFVSRWIKVQNESAASIGLNHYGFYAYDSIWAVAHAIDKFIEIYKNITFSVNNSSRLLNKEAAYIRLDELKVFTGGSDLVNILLQSNYTGVSGHLQFSPDRNIVSSGYEVININQMEITRVGYWSNAFGFSVVPPDQTLEKKGRGRVPQDQKLNTITWPGGMTAKPRGWVIADDARPLRIGVPKRASFVEFVTELPGNHQIQGYCIDIFKKALEFVPYDVPYVFKPFGNGQSNPNYDALVETVADNVFDAVVGDIAIVTNRTRIVDFSQPFTLTGLVIVAPIKKSKSSAWVFLKPFTADMWFVTAASFILVGIVIWILEHRINDDFRGPPQRQIVTMCMFSLSTLFKTNQENTVSSLSRMVMIIWLFLLMVITASYTASLTSILTVEQLSSSITGIDSLIASNLPIGYQVGSYAFNYLTESLYVQRSRLVALGNPEEYARALQLGPSLGGVAAIIDELPYIELFLSTQTDFGIIGRPFARSSWGFAFQRESPLALDMSTAXFETQXKRRASKIRERWFCKMGCPEERRSHSEPNQLRLVSFWGLYLSCGIVTLASLLVYILRTIRQYIRYKQRQKDIPSGSREASGGKCSHVIYSFLNFIDKKEEAIKKMFTHCENPEQQPT 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00027 913 FunFam Glutamate receptor 580 718 - -
Pral1379g00027 913 Pfam Bacterial extracellular solute-binding proteins, family 3 469 809 IPR001638 -
Pral1379g00027 913 CDD GluR_Plant 467 809 - -
Pral1379g00027 913 Gene3D - 144 420 - -
Pral1379g00027 913 SMART GluR_14 468 811 IPR001320 GO:0015276|GO:0016020
Pral1379g00027 913 FunFam Glutamate receptor 464 580 - -
Pral1379g00027 913 FunFam Glutamate receptor 144 311 - -
Pral1379g00027 913 PIRSF IGluLR_plant 1 913 IPR017103 -
Pral1379g00027 913 CDD PBP1_GABAb_receptor_plant 30 425 IPR044440 -
Pral1379g00027 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 866 IPR015683 -
Pral1379g00027 913 Gene3D - 47 396 - -
Pral1379g00027 913 Pfam Receptor family ligand binding region 46 405 IPR001828 -
Pral1379g00027 913 SUPERFAMILY Periplasmic binding protein-like II 446 809 - -
Pral1379g00027 913 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
Pral1379g00027 913 Gene3D - 580 719 - -
Pral1379g00027 913 Gene3D - 463 579 - -
Pral1379g00027 913 SUPERFAMILY Periplasmic binding protein-like I 23 460 IPR028082 -
Pral1379g00027 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Pral1379g00027 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Pral1379g00027 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00027 Pral-Chr1379 155488 160815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00027 12 913 Ion Channels AT2G32400 54.024 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00027 K05387 - gmx:100784247 1316.98