Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00010 ATGAACTGGAGTAGGGGCAGCATCCTTGGCCATGGCTCATCGGCCACCGTCTCCCTGGCTGCCTCTCCCCACTGTGGAGAAGCCTTCTTCGCCGTCAAGTCTTCGGAGCTTTCTCGCTCAGGGTTGTTACAGAAAGAGCAGCGAATTCTCTCTTCTCTGTCCTCTCCTTATATAGTTGGCTATAAAGGGTGTGACATCACAAAGGAGAACAGCAAGGTCTTCTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTCATTCAAGCAACTCGCGGGCAGGGTGCCCGCCTCGACGAGCGAATGATCGCGTACTACATTAGGCAAGTTTTGCAGGGGATGGAGTATCTACATTCAAATGGGTTGGTACATTGTGACATTAAGGGTACCAATATCTTAGTCGGCCAAGACGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCTGGCGGCGGCGGCGGCGGCCCCGATAAGTGGGACGCCGATGTTTATGGCGCCGGAGGTGGCTCGTGGCGAAGAACAGGGGTATCCTTGCGACATATGGGCACTCGGGTGCACTATGATTGAAGTGGCTTCAGGGCATTCCCCATGGCCTAATGTAGGAGACCCTGTTTCGATTCTTTACCGCATAGCATATTCCGGCGAGGTGCCGGAGATTCCGTGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCAAAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTGTTGCGGAATTGAATTCCAATTCTAAGCAAATCCACGAATCTAATTCAAGTTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAGTGGAAGAATCAGAGAGTGTGGGCAATCTAGTCCATAGTCATACAAGTTTGGAAAATTCGCCAGCCGTTAGAATCAGACGGTTAGCTACGAGGTCAGGGGAACCCGATTGGATGGAAGACGACGAGAATTGGATCACAACGATAGGGAATGAAGGAGGAGTTGAAGCATCAACTAGCAATAATTTGGAAGAGTCAGAGAAAAGCAATGTTAGCAGTAGAATTAGTGATTGTTTTTGGGATGATTACGGACGTAGGGATGTTAGTATTGTAACAAGTAGTACCATTTTCGCGAGAGGCATAGATAAAGTGCCACTCCATGTAGTATCAAACTTTTTATAA 1188 0.4806 MNWSRGSILGHGSSATVSLAASPHCGEAFFAVKSSELSRSGLLQKEQRILSSLSSPYIVGYKGCDITKENSKVFYNLFMEYMPLGTLIQATRGQGARLDERMIAYYIRQVLQGMEYLHSNGLVHCDIKGTNILVGQDGAKIADFGCAKLAAAAAAPISGTPMFMAPEVARGEEQGYPCDIWALGCTMIEVASGHSPWPNVGDPVSILYRIAYSGEVPEIPCFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFVAELNSNSKQIHESNSSSPTSILEQGFWSSVEESESVGNLVHSHTSLENSPAVRIRRLATRSGEPDWMEDDENWITTIGNEGGVEASTSNNLEESEKSNVSSRISDCFWDDYGRRDVSIVTSSTIFARGIDKVPLHVVSNFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00010 395 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Pral1379g00010 395 SUPERFAMILY Protein kinase-like (PK-like) 2 303 IPR011009 -
Pral1379g00010 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Pral1379g00010 395 CDD STKc_MAPKKK 2 254 - -
Pral1379g00010 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Pral1379g00010 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 300 - -
Pral1379g00010 395 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1379g00010 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 307 - -
Pral1379g00010 395 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1379g00010 395 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00010 Pral-Chr1379 47762 49001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00010 2 350 MAP Kinase Kinase Kinase AT5G55090 47.849 6.03e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pral1379g00010 Pkinase 6.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00010 K20716 - qsa:O6P43_028662 474.167