Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1379g00001 ATGGAGGGTCCGGGATTGGAAGAGAATAAGAAGTCTGAAGCGCATTTGACTTCTGCTGCAGCCTTCGTGGAGGGTGGAATCCAGGATGCTTGTGATGATGCTTGTAGTATATGTCTCGAAGCATTTCATGACAGCGATCCTTCAACAGTGACAAGTTGCAAACATGAGTTTCATCTTCAGTGCATTCTAGAATGGTGTCAACGAAGCTCTCAGTGCCCCATGTGCTGGCAACCTATCAGTCTCAAAGATCCTACAAGTCAGGAATTACTTGAAGCGGTGGAAAGAGAGAGGAACATTAGGTTGAATCCGCCTAGAAATGCCACAATATTTCATCATCCAGCTCTGGGTGATTTCGAGTTGCAACATCTGCCCGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATCATACAGCACTTAGCTGCTGCTGCTGCAATGGGACGGGCTCGTCATATTGCTAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGGCCACATTTTTTGGTATTTTCAGCCCATCCCAATTCACCTCCCATGGCTCCTGCCTCTCCAACCCATGGGGCAGATGGTGAACCAGCTTCAGCGATCACTGTTGCTACTTTATCTCCAACTCCTGCCACTGGGGAAGAGTCTTCACGGTCAACTTCTGTTCCTCTTGTTCAAGCAGACCATATCTCTGCTTCAGGATCAGGATCTACTGTTCTTGCTGCTGATAACCAGGGATCTTCTTACAACAGTAGGAGATCACCTAGCCAGTCTTCTCCTAGCAGTCAGGACAGAGCAGGGCCATCAGAATTCCAATCATTTTCGGAATCTTTGAAGTCTAGACTAAATGCAGTTTCAACGAGATACAAAGAGTCGATATCCAGGAGCACCAGAGGATGGAAGGAGAGATGGTTCTCTCGCAACAGCTCTATGCCTGATGCGGGATCTGAAGGTAGACAAGAGGCTAATGCAGGGATTGCAACTGTGTCACGCCTGATGGAACGACTTGATACCAGAGACAGCAATAGAAATGATAGCAATCCTGCCCAAAGTCATTTAGAAGGTGGTTCGGTTGCTGAACCAAATGACCGACATATTTCAAATGCTGAAGGCGAAAGCCTGTCGACAGATAATAACACAAAAGCATCCTTTGCGGCAGGTTCTAGTTCAAATTAA 1170 0.4701 MEGPGLEENKKSEAHLTSAAAFVEGGIQDACDDACSICLEAFHDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNIRLNPPRNATIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSAHPNSPPMAPASPTHGADGEPASAITVATLSPTPATGEESSRSTSVPLVQADHISASGSGSTVLAADNQGSSYNSRRSPSQSSPSSQDRAGPSEFQSFSESLKSRLNAVSTRYKESISRSTRGWKERWFSRNSSMPDAGSEGRQEANAGIATVSRLMERLDTRDSNRNDSNPAQSHLEGGSVAEPNDRHISNAEGESLSTDNNTKASFAAGSSSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1379g00001 389 MobiDBLite consensus disorder prediction 327 389 - -
Pral1379g00001 389 CDD RING-H2_RHF2A 22 84 - -
Pral1379g00001 389 SMART ring_2 35 75 IPR001841 -
Pral1379g00001 389 MobiDBLite consensus disorder prediction 171 195 - -
Pral1379g00001 389 MobiDBLite consensus disorder prediction 232 273 - -
Pral1379g00001 389 MobiDBLite consensus disorder prediction 366 389 - -
Pral1379g00001 389 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Pral1379g00001 389 Pfam Ring finger domain 34 75 IPR001841 -
Pral1379g00001 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 84 IPR013083 -
Pral1379g00001 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 84 - -
Pral1379g00001 389 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Pral1379g00001 389 SUPERFAMILY RING/U-box 28 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1379g00001 Pral-Chr1379 2184 6660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1379g00001 32 83 C3H Transcription Factor Family AT4G00335 44.231 1.09e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1379g00001 K19043 - gmx:100780275 602.438