Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1377g00005 ATGGTGAAACTGAGGGAACACAGTGAAGTGGGAGAGACTGAATGGGCAGAAGCAGCCGCCATGGCTGCTAGTTTTCTGAAAGCTCGAAGATCAACAAGAAAGAGATTCATCGGGGTTCGTCAGAGACCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACAATTCAGAACATAAGAGTTTGGTTAGGGACTTATGATTCTGCAGAAGAAGCTGCGAGAGCTTATGATGAAGCAGCTTGCTTGCTTCGTGGAGCGAACACTCGCAGAAACTTCTGGCCTTCTCAGTTTAGTAATTCCCCAGCAAATCCAGTTCTTCCCAGAAAGATTGCTAATCTCATCCTTCTTAGGCTCAAAGCTCGAAACCTTGCTTCTTCTTGTAATTTTTCCAGTAACCAAACAGAAGAAGAAGAAACAGCAGCAGAACCAAAGTTGACCCAGCTTGGTTATTTCCTTCCTGGATCTGATAATAATGGTGGTGAACTTTGTAGTGATGGAGTGATTGAAGAGGGGTGGGGGAGGAAAATGAATTTGGGAGTTGAAAAAGGAGAAAGTGAAGGAAAATCAGAAGAAAATGAGATGGCTAATCTCATGCTTTCTAGGCTAAACCGCGACTGTGTATCTGATAATAGTTCTGAAGTCAGCCATTATTTTCCCAGTAACCAAACAGGTTTAGAATCCCAGTTGCACCACTTTCTAGACGACTCAGACAATAGTTTTCTCTCAAACGTAGTCAGTTTTAGATCAGGAAACAAGACTAACTTGGATGAAGGAGGATTTAACGAAGAAAATTCTTCTGGGAAGCAATTGAAAGTGAATGATGAGGAAAACATTGAAACTAGATTCGAATCTGACATGTGGCGGCTCGTGGATTTCCAGTTTTTGGATAACGTGGGATCAACGGTTTGTTCTTCGTCTTCTTCTTCTCCATTTGAGATAGCAGAAGAGATGATGGGGCCAACAATGGATCAGCAAGACGGATATGAAAATGATGCCGAAAATTACGAAGCATCATTTCTCAGAGAAACTTTTAGGATGAAATATTATGAAAGAAAATTCTCAGCTTGTCTTTATACATACGGTGGTGTTTCTGAGTGCTTGAGGCTGCAATTTGGATCAGAAAATAATGCAGATGGGTTGGAAAATTTTTGA 1149 0.4151 MVKLREHSEVGETEWAEAAAMAASFLKARRSTRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGANTRRNFWPSQFSNSPANPVLPRKIANLILLRLKARNLASSCNFSSNQTEEEETAAEPKLTQLGYFLPGSDNNGGELCSDGVIEEGWGRKMNLGVEKGESEGKSEENEMANLMLSRLNRDCVSDNSSEVSHYFPSNQTGLESQLHHFLDDSDNSFLSNVVSFRSGNKTNLDEGGFNEENSSGKQLKVNDEENIETRFESDMWRLVDFQFLDNVGSTVCSSSSSSPFEIAEEMMGPTMDQQDGYENDAENYEASFLRETFRMKYYERKFSACLYTYGGVSECLRLQFGSENNADGLENF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1377g00005 382 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 218 - -
Pral1377g00005 382 FunFam ethylene-responsive transcription factor RAP2-11 34 93 - -
Pral1377g00005 382 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Pral1377g00005 382 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Pral1377g00005 382 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1377g00005 Pral-Chr1377 84919 86067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1377g00005 30 113 AP2-EREBP Transcription Factor Family AT5G19790 63.095 1.89e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1377g00005 AP2 1.3e-14 CL0081