Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1376g00003 ATGGTCTTCACAGCAGCCTTTATGCATGAAGATGGCCCTTTTTCTTTCTCCAGGAAGAGGCTGAGAGTATCAGATTTTGGATATCAAGATCTACATCCACACGCATATGCAGGATGTTCCAGTGATGCGCCATTATCTTCGCATCTGGATGTAGAAAGGGCTATTGGTGATATACCATCTTGTTGCAGTCTTGATGATAGATTTGATTCAGATTCTGGATTGGATATGAGCTGCCAGTCAAATATTAAAAGCGTTGATGATCCTGTATGCTTTACAACAGGAAATATTTCATTTCAGGATCAGAGTCATCCTGGCTATATGCAGCCTGCTTTTGTTAGTGGTTGGATGTATGTCAACGAAAATGGACAAATGTGTGGTCCCTATATTCAGGAGCAACTATATGAAGGATTAACTACTGGTTTCTTGCCAGTTGAGCTTCCTGTGTATCCTGTGATTAATGGCACATTAATGAACCCTGTACCATTGAACTACTTCAAGCAGTTTCCTGACCATGTTTCCACAGGGTTCTTATATCTGAGCACAAGTCGCTCAGTTCTAACCACGCCTACAGGTTGCTCCACATCATCTGGCAAGGATATGACATCATATAGACAAGGATCCTTTGAGCACGCTCCTTCTGTAGCTGTCAACCTTGATTCACAGTTAGTTTCTCTGTCACATTTCAGCTACACCAGTAAGGAAATCTTAACACCGATCTCAAAGTTACATGAAGAATGCTGTTGGCTTTATGAGGATGAAAAGGGAATGAAGCATGGACCACATTCCATTTTGGAATTAATATCCTGGCATCATTATGGCCATCTCCGAGATTCATCGGTGATTCATCATACTGAAAGTAAGTGTAGCCCCTTTGTCCTTTTGTCTGCTATAAATGCATGGAAAACAGGAAAGCTTGAAAATATCTGTAGATCAGATTCCAAAAGTGACAGGGCTTGTAGTGATATCAGAAGCTTCATCTGTGAAATATCTGAGGAAATTTGTTCTCAGCTACATTCAGGAGTGATGAAAACTGCCCGCAGGGTGGTGTTGGATGAGATTATCAGTAACAACATTGCAGAATTTGTTACTGAAAAGAAATCTCGGAGGCATAAGCATGACTCAGTTGATCAGCCTTCTGGGACTAGCTTGTTAGACTGCAGAATGACTGAGGCTGCTGTGGAGATGAGAAAAGGCACGGTTCTTACAAGCGAGCCAGCATCTTCCCAAATGCTTGATGATCAGTCTTGTGAAGTTTCCAGAGTGTCTCCAACAAGCACTAAATCAGTTGGAAGCATTGAAAATTTTTGGTGTTCATATGCTGTTGTTCGTAAAGTGCTTTGTGATTATTGCATGCAAGTCATGTGGAATGCTGTGGTTTATGACTCTATGGCAGGGTACATACATAAGTGGAGAAAGAGACAACGTTGGTCTACTTGTAGTAAGCCTCGACCATCTATTTATGGATATAAAGATTATGGTGGAATGATCACATCAGAAGAAGCTTTGCTTCCCAGGCCAGTTTCCTCTGAACATGTTGCTGTTTGGCATCCTCATGGTGGAGTGGTGGCACTGGAGAGAGACTATCGTAGTCAATCGTCTTCTATTGTCTTGAAAGATGGTAATATTCCAGAAAATGGAAGGGTGTCATTTTCTGGCTGTGATCGTATAGATTTGATATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTCGATATCAGAGGCATCTTTAACTGAATACATTAAAAGTTTAGTTGACAAGGAAGTGGAAAGATTATTTAAATGTTCTGAAGAAGACAACTTGAACAAGGATGCTGTTACTGATGACATTTTTGAAGAGATATCTTGTGACAAAACATCTGAAGAGCGGATTTTATCTGACAATAAGGTTGCTATGAAAGGAGATCGTCTTCAAGATACCATATCTGGAAACCGTATGTCTACTTTATTCTCAAGTGCATTTCAGGAGTTGCATGCCAATGTAGGTGATGTGGTTAATGAAAAGGAGATTGGCGACATATCACCTCCTGGATGTGAAAAGAATTTAAAAACTATTATCCCACAATACAATTATAAGTATCGACCTTCAAGATCAGTTGAAAGTGTACCTAAGATAACAAAATATGTTACAACAGCCCTATGCCGACAGAAATTGCATTCTGAGGTTCTTGAAGAGTGGAAATCTTTGTTTCTTGATGCTGCATTTGATCAACTTTTTGCATCATTCTGCACTACAAAGAAGATCAGCCAGCCTGATGGTTACAAGGAAGGGAAAATACTGAAGTCATCTGGGGAACATTTGAACAATCCAACTCTGGGAAGAATGAAGAAAATACCCAAAAATTCTTCATCAGAAAATTCTCGGATGGTTGGGAAATATACATATCATCGAAAGAAGCTGCCACAGAAAGAGCGACATTCTTCTCAACACATAACTGCGCCAGTCAAAAAACAAGTTGATAAGAAGAAGAAATGTTTTTCTGGGGATTTGGATGATTCTGCCAAAGTTGGAATATCTCCTGATAAAACTGTGCAGACCAAGCTGATAAAAGGGAAGAAGGATAAACAGGCTAATGGAAAGTCTCTTGCTGCTGGTGCTAAAAGGCACTTGCAGAGTAAGAAGTTGTCTATAAATAATGCAACTAGTAAAAAATTAGTGAAGCATTCACAGGCAGTCCAAGATGATGTAAAGAATGATGAGAAAAGTAATGGAGAGAAGATTTTAGCTGTTGTGGAAAATAGCGTTGGCAAGAAAAAAGCAGTTGATAGCAGTGGTCGTGATGGTGCCATTCATGGAAAGTCCACTCGTCATTGCTCCAGGGGAGCTCTTAATGTGACAAATAAAGCATCAAAACTAAAAAGGAAGCATCTAGCTGATGACATGCCATCCTCACGTCCTTCAAAGGTTTTGAAGATTGCTAATGACGGTTCAAAGGTTGGAGTTGGCGGACACGCCATGTCAAAGACGAAGTCTGCTAAATGCAAGCCATTGAAGTCATGCCCTAGATCTGACGGATGTGCCAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTGTAAATGCCAGTTCTGCTGATAGAGCACATGTTAGGGGAACACTCTGTGTTCAAAAGAACTCTGTACCATCTGATAGTAATCCATTTCATTGGTCAAATTGTAAGGTTCTTTCTGCACGCACAAATAGAGTGAAAATGCGTAACCTTCTTGCAGCTGCGGAAGGTGCTGATCTTCTGAAAGCCACTCAATTGAAGGCAAGGAAAAAACGTTTACGTTTTCAAAGAAGTAAAATACATGACTGGGGTATTGTTGCCTTGGAGTCAATAGAGGCGGAAGACTTTGTGATTGAATATATTGGAGAATTAATCCGTCCTCAGATATCTGATATACGTGAACGTCAATATGAAAAGATGGGAATTGGCAGCAGTTACTTGTTTAGACTTGATGATGGCTATGTGGTTGATGCTACAAAAAGAGGTGGTATTGCAAGATTTATAAATCACTCTTGTGAGCCTAATTGCTATACCAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGTCATATAGCCGCTGGTGAAGAAATTACATACAATTATAAATTTCCTTTGGAGGAGAATAAGATTCCCTGCAACTGTGGGTCCAAAAAGTGTCGCGGATCACTGAATTAG 3687 0.4014 MVFTAAFMHEDGPFSFSRKRLRVSDFGYQDLHPHAYAGCSSDAPLSSHLDVERAIGDIPSCCSLDDRFDSDSGLDMSCQSNIKSVDDPVCFTTGNISFQDQSHPGYMQPAFVSGWMYVNENGQMCGPYIQEQLYEGLTTGFLPVELPVYPVINGTLMNPVPLNYFKQFPDHVSTGFLYLSTSRSVLTTPTGCSTSSGKDMTSYRQGSFEHAPSVAVNLDSQLVSLSHFSYTSKEILTPISKLHEECCWLYEDEKGMKHGPHSILELISWHHYGHLRDSSVIHHTESKCSPFVLLSAINAWKTGKLENICRSDSKSDRACSDIRSFICEISEEICSQLHSGVMKTARRVVLDEIISNNIAEFVTEKKSRRHKHDSVDQPSGTSLLDCRMTEAAVEMRKGTVLTSEPASSQMLDDQSCEVSRVSPTSTKSVGSIENFWCSYAVVRKVLCDYCMQVMWNAVVYDSMAGYIHKWRKRQRWSTCSKPRPSIYGYKDYGGMITSEEALLPRPVSSEHVAVWHPHGGVVALERDYRSQSSSIVLKDGNIPENGRVSFSGCDRIDLICILESVENELHSISEASLTEYIKSLVDKEVERLFKCSEEDNLNKDAVTDDIFEEISCDKTSEERILSDNKVAMKGDRLQDTISGNRMSTLFSSAFQELHANVGDVVNEKEIGDISPPGCEKNLKTIIPQYNYKYRPSRSVESVPKITKYVTTALCRQKLHSEVLEEWKSLFLDAAFDQLFASFCTTKKISQPDGYKEGKILKSSGEHLNNPTLGRMKKIPKNSSSENSRMVGKYTYHRKKLPQKERHSSQHITAPVKKQVDKKKKCFSGDLDDSAKVGISPDKTVQTKLIKGKKDKQANGKSLAAGAKRHLQSKKLSINNATSKKLVKHSQAVQDDVKNDEKSNGEKILAVVENSVGKKKAVDSSGRDGAIHGKSTRHCSRGALNVTNKASKLKRKHLADDMPSSRPSKVLKIANDGSKVGVGGHAMSKTKSAKCKPLKSCPRSDGCARTSIDGWEWHKWSVNASSADRAHVRGTLCVQKNSVPSDSNPFHWSNCKVLSARTNRVKMRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALESIEAEDFVIEYIGELIRPQISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEENKIPCNCGSKKCRGSLN 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1376g00003 1228 ProSiteProfiles Post-SET domain profile. 1212 1228 IPR003616 -
Pral1376g00003 1228 CDD SET_SETD1 1077 1224 IPR037841 GO:0042800|GO:0048188
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 872 887 - -
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 805 819 - -
Pral1376g00003 1228 ProSiteProfiles SET domain profile. 1089 1206 IPR001214 GO:0005515
Pral1376g00003 1228 SUPERFAMILY GYF domain 243 297 IPR035445 -
Pral1376g00003 1228 ProSiteProfiles GYF domain profile. 245 295 IPR003169 GO:0005515
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 919 934 - -
Pral1376g00003 1228 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 796 1228 IPR044570 GO:0042800|GO:0051568
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 888 902 - -
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 916 935 - -
Pral1376g00003 1228 Gene3D SET domain 935 1228 IPR046341 -
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 760 819 - -
Pral1376g00003 1228 SUPERFAMILY SET domain 1084 1225 IPR046341 -
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 764 790 - -
Pral1376g00003 1228 MobiDBLite consensus disorder prediction 848 902 - -
Pral1376g00003 1228 Pfam SET domain 1101 1205 IPR001214 GO:0005515
Pral1376g00003 1228 Gene3D - 234 323 IPR035445 -
Pral1376g00003 1228 SMART PostSET_3 1212 1228 IPR003616 -
Pral1376g00003 1228 SMART set_7 1089 1212 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1376g00003 Pral-Chr1376 26194 41372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1376g00003 1088 1228 C2H2 Transcription Factor Family AT2G23740 38.037 3.89e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral1376g00003 SET 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1376g00003 - - gmx:100805708 1306.97