Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1375g00005 ATGGCAGATCTTGCTAGCTTTGGGAATTCTGAGCGTGACATTGAGCAAGCACTGGTAGCTTTAAAAAAAGGCTCTCAATTACTTAAGTATAATCGGAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCACCTGATGCTACAACATTGATTTGGATTTCTCATGGAAGGGAAAAAAATCTGAAGTTATCTTCTGTTTCACGTATCATCCCTGGACAAAGAACTCTACAAGATGGTGTAGACTTTTTCCCAATTAGTCGTCCTTTTGGTGTATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGACTCTACAGATTCTCTATTGCATTGGCCAACCTCAGATGTGGCAACCGAGTGTTCAAATATGCAACAAAGGACAAGTACTTCAGATGGCTTTCGTATTAGTGTGTCAAGCACACCTAGTTGTTCTAGCGGAGGATCAGGGCCAGATGACATAGAGTCACTGGGTGATGTTTATATATGGGGAGAGGTTTGGACTGATGGGGCTTCACCTAATACATTAGGTTGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTAAACCATTAGAGTCAAATGTTGTCCTTGATGTTCAACAGATTGCATCTGGTGTGCGTCACATTGCTCTGGTTACTAGGCAAGGAGAGGTTTTTTCTTGGGGTGAGGAATATGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTCTACCATCCCCATCTTGTTGAGTTCCTCTCTGTTCAAAATGTTGATTTTATTGCATGTGGAGAGTATCACACCTGTGCTATTTCTACATCAGGTGATCTATTCACATGGGGAGATGGTGCTCATAATGCTGGGCTTCTTGGTCATGGTAGTGATGTTAGTCATTGGATCCCGAAAAGGGTTACTGGCCCTTTGGAAGGTCTTCAAGTTTTATCCATAGCATGTGGTGCATGGCATTCTGCATTGGCAACCTCTAATGGGAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGACAGGAAGAATGTGTCATATCCAAAGGAAGTACAATCATTGAGTGGACTAAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTATAGAGGTTATGGGTCATCAAGGTTCTAATATTTTATCCAAGAAGCTCTTTACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCTACTTGTGTCTCTGCACTAATTGATTATAATTTTCACCAGATAGCCTGTGGGCACACTTTGACTGTTGCCTTAGATACATCAGGTTTTGTATTTACTATGGGTAGCACTATATATGGTCAATTAGGAAATCCTTTGTCTGATGGAAAAATGCCTACAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTCTTGACATCAAGAAGTGAATTATATACCTGGGGGAGGGGAGCAAATGGAAGATTAGGGCATGGAGACATAGAAAACAGAAAATCACCAACACTAGTTGAAGGTTTGAAGGATAGGCATGTCAAAAATATCTCTTGTGGCTCAAATTTTACATCCTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTGTTTGTTCTGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGGTTGGTACATTGTCATGCTTGTAGCTCTAAGAAGGCTCTAAGAGCAGCATTAGCACCAACACCAGGAAAACCGCATCGTGTGTGTGATGCTTGTTATAGTAAGCTTAAAGCTACTGAGATTGGGAGTGCTTCTACTTCTAATAGGAAACCTACTCCTCCTCGTCAATCCTTAGATGGCAGGGAAAGATTAGATCGGGGAGAAGTAAGGTCTTCAAGAATTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGAAATAAGATTGAATCTAGACATGATTTTTCTTCTATAGCCCAAACTCCTCAATCAATTTTAGAATTCAAAGATGTTGCATTTCCATGTTCATTGAGGCCCATTCATAATACTTTCAAGCCTACTTCTGTAACTTCGAGTCCACCAAGAACTCCCCCAGCCAATTTAAGACCTGCATCACCATATATAAGACGACCAAGCCCATCGCGTTCTTCCACCCTTGGGTTTTCTAGAAGCATGATTGAAAATTTGAGGAAATCAAATGAGCTTATAAACCAAGAACTCTCCAAATTACAAAATCAAATTCGAAGCTTGAAGCAGAAGAATGACATGCAAGACATGGAGATTCACAAGCTGAAGAAAAATGTTAAGGAAGCTACCTTGTTGACTACTGAGGAATCTTCTAAGCATAGGCTGGCTAGGGAGTTTATTAAGAGCATGACAGATCAGTTGGAAGAGGTGACACAACATTTGCCACCTGATAGTCCAGACAGTGAAACGTTGAGAAGTATCCATGCTCAAGCTGAAGATTTTCTAAGAGAAAATATAGAATCTGAAGCATCATGTTCCATACTTTCAAACTTAGAGTCTAATCAAGAAACTGGATATGACACGCCAGCTTTAGATATCAATGGTTCTAAATTGCAAGAACATAAAATTATTGATCCTGTTGGAGTTGAACCATCTCAAGATTCAGGAAGTTCTCTTCAAGAAAGTAATAGATCATCTGTATCTAGTATAGAGGCAGCAACAACTCCACAAAGCTTAGAAAATGGTTCACAATCACCAGACTCTATGAAACAAGGGAGAGAAACAGAATCACAGGTCATCGAACAATTTGAATCTGGTGTTTATGTGACGCTGGTAATACGGCCAAGTGGTAGAAAGGCTTTCAAACGAGTTAGATTCAGTAAGCGAAAGTTCGATGCACAGCAGGCAGAAGAATGGTGGAATAAAAACAAAGATATGGTGTTTAGAAAGTATAGTTCACCAGCAACAAATCCTGCAGCTCGTGGGTCATCATCTAATACGCAACCATTAGTTGAAGACAACTCTGAAACTTCTTGA 3045 0.4053 MADLASFGNSERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKNLKLSSVSRIIPGQRTLQDGVDFFPISRPFGVLEFTSSIARGRDSTDSLLHWPTSDVATECSNMQQRTSTSDGFRISVSSTPSCSSGGSGPDDIESLGDVYIWGEVWTDGASPNTLGCQVALMTDVLVPKPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEEYGGRLGHGIDKDFYHPHLVEFLSVQNVDFIACGEYHTCAISTSGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLEGLQVLSIACGAWHSALATSNGKLFTFGDGTFGVLGHGDRKNVSYPKEVQSLSGLKTIKVACGVWHTAAIIEVMGHQGSNILSKKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGHTLTVALDTSGFVFTMGSTIYGQLGNPLSDGKMPTKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIENRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATEIGSASTSNRKPTPPRQSLDGRERLDRGEVRSSRILMSSITEPVKFLEIWGNKIESRHDFSSIAQTPQSILEFKDVAFPCSLRPIHNTFKPTSVTSSPPRTPPANLRPASPYIRRPSPSRSSTLGFSRSMIENLRKSNELINQELSKLQNQIRSLKQKNDMQDMEIHKLKKNVKEATLLTTEESSKHRLAREFIKSMTDQLEEVTQHLPPDSPDSETLRSIHAQAEDFLRENIESEASCSILSNLESNQETGYDTPALDINGSKLQEHKIIDPVGVEPSQDSGSSLQESNRSSVSSIEAATTPQSLENGSQSPDSMKQGRETESQVIEQFESGVYVTLVIRPSGRKAFKRVRFSKRKFDAQQAEEWWNKNKDMVFRKYSSPATNPAARGSSSNTQPLVEDNSETS 1014
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 987 1014 - -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Pral1375g00005 1014 SUPERFAMILY FYVE/PHD zinc finger 541 607 IPR011011 -
Pral1375g00005 1014 Gene3D - 13 77 IPR011993 -
Pral1375g00005 1014 SUPERFAMILY PH domain-like 13 75 - -
Pral1375g00005 1014 Gene3D - 378 540 IPR009091 -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 130 150 - -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 883 933 - -
Pral1375g00005 1014 SMART fyve_4 539 608 IPR000306 GO:0046872
Pral1375g00005 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 202 212 IPR000408 -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 216 267 IPR000408 -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 992 1014 - -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 130 149 - -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 613 635 - -
Pral1375g00005 1014 Pfam Transcription factor regulating root and shoot growth via Pin3 933 987 IPR013591 -
Pral1375g00005 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 618 IPR013083 -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Pral1375g00005 1014 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 545 607 IPR017455 -
Pral1375g00005 1014 Pfam Transcription factor BRX N-terminal domain 791 826 IPR027988 -
Pral1375g00005 1014 FunFam PH, RCC1 and FYVE domains-containing protein 1 128 376 - -
Pral1375g00005 1014 Pfam FYVE zinc finger 541 607 IPR000306 GO:0046872
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 437 485 IPR000408 -
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 322 371 IPR000408 -
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 267 318 IPR000408 -
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 490 537 IPR000408 -
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 387 433 IPR000408 -
Pral1375g00005 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 216 264 IPR000408 -
Pral1375g00005 1014 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 811 - -
Pral1375g00005 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 361 371 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 484 505 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 325 339 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 268 284 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 218 234 IPR000408 -
Pral1375g00005 1014 PRINTS Chromosome condensation regulator RCC1 signature 426 444 IPR000408 -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 322 IPR000408 -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Pral1375g00005 1014 CDD FYVE_like_SF 551 603 - -
Pral1375g00005 1014 SUPERFAMILY RCC1/BLIP-II 156 542 IPR009091 -
Pral1375g00005 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 489 540 IPR000408 -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 887 933 - -
Pral1375g00005 1014 Gene3D - 279 377 IPR009091 -
Pral1375g00005 1014 Gene3D - 114 278 IPR009091 -
Pral1375g00005 1014 MobiDBLite consensus disorder prediction 698 733 - -
Pral1375g00005 1014 Coils Coil 740 781 - -
Pral1375g00005 1014 ProSiteProfiles BRX domain profile. 933 988 IPR013591 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral1375g00005 Pral-Chr1375 101987 111160 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1375g00005 934 988 Major Intrinsic Protein MIP AT1G31880 38.182 2.41e-07 52.4