Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1375g00005 | ATGGCAGATCTTGCTAGCTTTGGGAATTCTGAGCGTGACATTGAGCAAGCACTGGTAGCTTTAAAAAAAGGCTCTCAATTACTTAAGTATAATCGGAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCACCTGATGCTACAACATTGATTTGGATTTCTCATGGAAGGGAAAAAAATCTGAAGTTATCTTCTGTTTCACGTATCATCCCTGGACAAAGAACTCTACAAGATGGTGTAGACTTTTTCCCAATTAGTCGTCCTTTTGGTGTATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGACTCTACAGATTCTCTATTGCATTGGCCAACCTCAGATGTGGCAACCGAGTGTTCAAATATGCAACAAAGGACAAGTACTTCAGATGGCTTTCGTATTAGTGTGTCAAGCACACCTAGTTGTTCTAGCGGAGGATCAGGGCCAGATGACATAGAGTCACTGGGTGATGTTTATATATGGGGAGAGGTTTGGACTGATGGGGCTTCACCTAATACATTAGGTTGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTAAACCATTAGAGTCAAATGTTGTCCTTGATGTTCAACAGATTGCATCTGGTGTGCGTCACATTGCTCTGGTTACTAGGCAAGGAGAGGTTTTTTCTTGGGGTGAGGAATATGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTCTACCATCCCCATCTTGTTGAGTTCCTCTCTGTTCAAAATGTTGATTTTATTGCATGTGGAGAGTATCACACCTGTGCTATTTCTACATCAGGTGATCTATTCACATGGGGAGATGGTGCTCATAATGCTGGGCTTCTTGGTCATGGTAGTGATGTTAGTCATTGGATCCCGAAAAGGGTTACTGGCCCTTTGGAAGGTCTTCAAGTTTTATCCATAGCATGTGGTGCATGGCATTCTGCATTGGCAACCTCTAATGGGAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGACAGGAAGAATGTGTCATATCCAAAGGAAGTACAATCATTGAGTGGACTAAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTATAGAGGTTATGGGTCATCAAGGTTCTAATATTTTATCCAAGAAGCTCTTTACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCTACTTGTGTCTCTGCACTAATTGATTATAATTTTCACCAGATAGCCTGTGGGCACACTTTGACTGTTGCCTTAGATACATCAGGTTTTGTATTTACTATGGGTAGCACTATATATGGTCAATTAGGAAATCCTTTGTCTGATGGAAAAATGCCTACAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTCTTGACATCAAGAAGTGAATTATATACCTGGGGGAGGGGAGCAAATGGAAGATTAGGGCATGGAGACATAGAAAACAGAAAATCACCAACACTAGTTGAAGGTTTGAAGGATAGGCATGTCAAAAATATCTCTTGTGGCTCAAATTTTACATCCTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTGTTTGTTCTGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGGTTGGTACATTGTCATGCTTGTAGCTCTAAGAAGGCTCTAAGAGCAGCATTAGCACCAACACCAGGAAAACCGCATCGTGTGTGTGATGCTTGTTATAGTAAGCTTAAAGCTACTGAGATTGGGAGTGCTTCTACTTCTAATAGGAAACCTACTCCTCCTCGTCAATCCTTAGATGGCAGGGAAAGATTAGATCGGGGAGAAGTAAGGTCTTCAAGAATTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGAAATAAGATTGAATCTAGACATGATTTTTCTTCTATAGCCCAAACTCCTCAATCAATTTTAGAATTCAAAGATGTTGCATTTCCATGTTCATTGAGGCCCATTCATAATACTTTCAAGCCTACTTCTGTAACTTCGAGTCCACCAAGAACTCCCCCAGCCAATTTAAGACCTGCATCACCATATATAAGACGACCAAGCCCATCGCGTTCTTCCACCCTTGGGTTTTCTAGAAGCATGATTGAAAATTTGAGGAAATCAAATGAGCTTATAAACCAAGAACTCTCCAAATTACAAAATCAAATTCGAAGCTTGAAGCAGAAGAATGACATGCAAGACATGGAGATTCACAAGCTGAAGAAAAATGTTAAGGAAGCTACCTTGTTGACTACTGAGGAATCTTCTAAGCATAGGCTGGCTAGGGAGTTTATTAAGAGCATGACAGATCAGTTGGAAGAGGTGACACAACATTTGCCACCTGATAGTCCAGACAGTGAAACGTTGAGAAGTATCCATGCTCAAGCTGAAGATTTTCTAAGAGAAAATATAGAATCTGAAGCATCATGTTCCATACTTTCAAACTTAGAGTCTAATCAAGAAACTGGATATGACACGCCAGCTTTAGATATCAATGGTTCTAAATTGCAAGAACATAAAATTATTGATCCTGTTGGAGTTGAACCATCTCAAGATTCAGGAAGTTCTCTTCAAGAAAGTAATAGATCATCTGTATCTAGTATAGAGGCAGCAACAACTCCACAAAGCTTAGAAAATGGTTCACAATCACCAGACTCTATGAAACAAGGGAGAGAAACAGAATCACAGGTCATCGAACAATTTGAATCTGGTGTTTATGTGACGCTGGTAATACGGCCAAGTGGTAGAAAGGCTTTCAAACGAGTTAGATTCAGTAAGCGAAAGTTCGATGCACAGCAGGCAGAAGAATGGTGGAATAAAAACAAAGATATGGTGTTTAGAAAGTATAGTTCACCAGCAACAAATCCTGCAGCTCGTGGGTCATCATCTAATACGCAACCATTAGTTGAAGACAACTCTGAAACTTCTTGA | 3045 | 0.4053 | MADLASFGNSERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKNLKLSSVSRIIPGQRTLQDGVDFFPISRPFGVLEFTSSIARGRDSTDSLLHWPTSDVATECSNMQQRTSTSDGFRISVSSTPSCSSGGSGPDDIESLGDVYIWGEVWTDGASPNTLGCQVALMTDVLVPKPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEEYGGRLGHGIDKDFYHPHLVEFLSVQNVDFIACGEYHTCAISTSGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLEGLQVLSIACGAWHSALATSNGKLFTFGDGTFGVLGHGDRKNVSYPKEVQSLSGLKTIKVACGVWHTAAIIEVMGHQGSNILSKKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGHTLTVALDTSGFVFTMGSTIYGQLGNPLSDGKMPTKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIENRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATEIGSASTSNRKPTPPRQSLDGRERLDRGEVRSSRILMSSITEPVKFLEIWGNKIESRHDFSSIAQTPQSILEFKDVAFPCSLRPIHNTFKPTSVTSSPPRTPPANLRPASPYIRRPSPSRSSTLGFSRSMIENLRKSNELINQELSKLQNQIRSLKQKNDMQDMEIHKLKKNVKEATLLTTEESSKHRLAREFIKSMTDQLEEVTQHLPPDSPDSETLRSIHAQAEDFLRENIESEASCSILSNLESNQETGYDTPALDINGSKLQEHKIIDPVGVEPSQDSGSSLQESNRSSVSSIEAATTPQSLENGSQSPDSMKQGRETESQVIEQFESGVYVTLVIRPSGRKAFKRVRFSKRKFDAQQAEEWWNKNKDMVFRKYSSPATNPAARGSSSNTQPLVEDNSETS | 1014 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 987 | 1014 | - | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 385 | 436 | IPR000408 | - | |
| Pral1375g00005 | 1014 | SUPERFAMILY | FYVE/PHD zinc finger | 541 | 607 | IPR011011 | - | |
| Pral1375g00005 | 1014 | Gene3D | - | 13 | 77 | IPR011993 | - | |
| Pral1375g00005 | 1014 | SUPERFAMILY | PH domain-like | 13 | 75 | - | - | |
| Pral1375g00005 | 1014 | Gene3D | - | 378 | 540 | IPR009091 | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 883 | 933 | - | - | |
| Pral1375g00005 | 1014 | SMART | fyve_4 | 539 | 608 | IPR000306 | GO:0046872 | |
| Pral1375g00005 | 1014 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 202 | 212 | IPR000408 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 216 | 267 | IPR000408 | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 992 | 1014 | - | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 130 | 149 | - | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 613 | 635 | - | - | |
| Pral1375g00005 | 1014 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 933 | 987 | IPR013591 | - | |
| Pral1375g00005 | 1014 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 541 | 618 | IPR013083 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 437 | 488 | IPR000408 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 545 | 607 | IPR017455 | - | |
| Pral1375g00005 | 1014 | Pfam | Transcription factor BRX N-terminal domain | 791 | 826 | IPR027988 | - | |
| Pral1375g00005 | 1014 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 128 | 376 | - | - | |
| Pral1375g00005 | 1014 | Pfam | FYVE zinc finger | 541 | 607 | IPR000306 | GO:0046872 | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 437 | 485 | IPR000408 | - | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 322 | 371 | IPR000408 | - | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 267 | 318 | IPR000408 | - | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 490 | 537 | IPR000408 | - | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 387 | 433 | IPR000408 | - | |
| Pral1375g00005 | 1014 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 216 | 264 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 811 | - | - | |
| Pral1375g00005 | 1014 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 361 | 371 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 309 | 325 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 484 | 505 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 339 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 268 | 284 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 218 | 234 | IPR000408 | - | |
| Pral1375g00005 | 1014 | PRINTS | Chromosome condensation regulator RCC1 signature | 426 | 444 | IPR000408 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 322 | IPR000408 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 323 | 374 | IPR000408 | - | |
| Pral1375g00005 | 1014 | CDD | FYVE_like_SF | 551 | 603 | - | - | |
| Pral1375g00005 | 1014 | SUPERFAMILY | RCC1/BLIP-II | 156 | 542 | IPR009091 | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 489 | 540 | IPR000408 | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 887 | 933 | - | - | |
| Pral1375g00005 | 1014 | Gene3D | - | 279 | 377 | IPR009091 | - | |
| Pral1375g00005 | 1014 | Gene3D | - | 114 | 278 | IPR009091 | - | |
| Pral1375g00005 | 1014 | MobiDBLite | consensus disorder prediction | 698 | 733 | - | - | |
| Pral1375g00005 | 1014 | Coils | Coil | 740 | 781 | - | - | |
| Pral1375g00005 | 1014 | ProSiteProfiles | BRX domain profile. | 933 | 988 | IPR013591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1375g00005 | Pral-Chr1375 | 101987 | 111160 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1375g00005 | 934 | 988 | Major Intrinsic Protein MIP | AT1G31880 | 38.182 | 2.41e-07 | 52.4 |