Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1375g00003 ATGGCAGATCTTGCTAGCTTTGGGAATTCTGAGCGTGACATTGAGCAAGCACTGGTAGCTTTAAAAAAAGGCTCTCAATTACTTAAGTATAATCGGAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCACCTGATGCTACAACATTGATTTGGATTTCTCATGGAAGGGAAAAAAATCTGAAGTTATCTTCTGTTTCACGTATCATCCCTGGACAAAGAACTGCTGTATTTAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAAAAATGGGGAACGGACACTTGATCTGATTTGCAAGGACAAAGCTGAGGTAGAGATATGGTTTGGAGGTCTGAAGGCATTAACTTCTCCTAGACAACACACCCTACGTTCTAAAAGTAACTTATATGATCTACAAGATGGTGTAGACTTTTTCCCAATTAGTCGTCCTTTTGGTGTATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGACTCTACAGATTCTCTATTGCATTGGCCAACCTCAGATGTGGCAACCGAGTGTTCAAATATGCAACAAAGGACAAGTACTTCAGATGGCTTTCGTATTAGTGTGTCAAGCACACCTAGTTGTTCTAGCGGAGGATCAGGGCCAGATGACATAGAGTCACTGGGTGATGTTTATATATGGGGAGAGGTTTGGACTGATGGGGCTTCACCTAATACATTAGGTTGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTAAACCATTAGAGTCAAATGTTGTCCTTGATGTTCAACAGATTGCATCTGGTGTGCGTCACATTGCTCTGGTTACTAGGCAAGGAGAGGTTTTTTCTTGGGGTGAGGAATATGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTCTACCATCCCCATCTTGTTGAGTTCCTCTCTGTTCAAAATGTTGATTTTATTGCATGTGGAGAGTATCACACCTGTGCTATTTCTACATCAGGTGATCTATTCACATGGGGAGATGGTGCTCATAATGCTGGGCTTCTTGGTCATGGTAGTGATGTTAGTCATTGGATCCCGAAAAGGGTTACTGGCCCTTTGGAAGGTCTTCAAGTTTTATCCATAGCATGTGGTGCATGGCATTCTGCATTGGCAACCTCTAATGGGAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGACAGGAAGAATGTGTCATATCCAAAGGAAGTACAATCATTGAGTGGACTAAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTATAGAGGTTATGGGTCATCAAGGTTCTAATATTTTATCCAAGAAGCTCTTTACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCTACTTGTGTCTCTGCACTAATTGATTATAATTTTCACCAGATAGCCTGTGGGCACACTTTGACTGTTGCCTTAGATACATCAGGTTTTGTATTTACTATGGGTAGCACTATATATGGTCAATTAGGAAATCCTTTGTCTGATGGAAAAATGCCTACAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTCTTGACATCAAGAAGTGAATTATATACCTGGGGGAGGGGAGCAAATGGAAGATTAGGGCATGGAGACATAGAAAACAGAAAATCACCAACACTAGTTGAAGGTTTGAAGGATAGGCATGTCAAAAATATCTCTTGTGGCTCAAATTTTACATCCTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTGTTTGTTCTGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGGTTGGTACATTGTCATGCTTGTAGCTCTAAGAAGGCTCTAAGAGCAGCATTAGCACCAACACCAGGAAAACCGCATCGTGTGTGTGATGCTTGTTATAGTAAGCTTAAAGCTACTGAGATTGGGAGTGCTTCTACTTCTAATAGGAAACCTACTCCTCCTCGTCAATCCTTAGATGGCAGGGAAAGATTAGATCGGGGAGAAGTAAGGTCTTCAAGAATTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGAAATAAGATTGAATCTAGACATGATTTTTCTTCTATAGCCCAAACTCCTCAATCAATTTTAGAATTCAAAGATGTTGCATTTCCATGTTCATTGAGGCCCATTCATAATACTTTCAAGCCTACTTCTGTAACTTCGAGTCCACCAAGAACTCCCCCAGCCAATTTAAGACCTGCATCACCATATATAAGACGACCAAGCCCATCGCGTTCTTCCACCCTTGGGTTTTCTAGAAGCATGATTGAAAATTTGAGGAAATCAAATGAGCTTATAAACCAAGAACTCTCCAAATTACAAAATCAAATTCGAAGCTTGAAGCAGAAGAATGACATGCAAGACATGGAGATTCACAAGCTGAAGAAAAATGTTAAGGAAGCTACCTTGTTGACTACTGAGGAATCTTCTAAGCATAGGCTGGCTAGGGAGTTTATTAAGAGCATGACAGATCAGTTGGAAGAGGTGACACAACATTTGCCACCTGATAGTCCAGACAGTGAAACGTTGAGAAGTATCCATGCTCAAGCTGAAGATTTTCTAAGAGAAAATATAGAATCTGAAGCATCATGTTCCATACTTTCAAACTTAGAGTCTAATCAAGAAACTGGATATGACACGCCAGCTTTAGATATCAATGGTTCTAAATTGCAAGAACATAAAATTATTGATCCTGTTGGAGTTGAACCATCTCAAGATTCAGGAAGTTCTCTTCAAGAAAGTAATAGATCATCTGTATCTAGTATAGAGGCAGCAACAACTCCACAAAGCTTAGAAAATGGTTCACAATCACCAGACTCTATGAAACAAGGGAGAGAAACAGAATCACAGGTCATCGAACAATTTGAATCTGGTGTTTATGTGACGCTGGTAATACGGCCAAGTGGTAGAAAGGCTTTCAAACGAGTTAGATTCAGTAAGCGAAAGTTCGATGCACAGCAGGCAGAAGAATGGTGGAATAAAAACAAAGATATGGTGTTTAGAAAGTATAGTTCACCAGCAACAAATCCTGCAGCTCGTGGGTCATCATCTAATACGCAACCATTAGTTGAAGACAACTCTGAAACTTCTTGA 3234 0.4045 MADLASFGNSERDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKNLKLSSVSRIIPGQRTAVFRRHLRPEKDYLSFSLVYKNGERTLDLICKDKAEVEIWFGGLKALTSPRQHTLRSKSNLYDLQDGVDFFPISRPFGVLEFTSSIARGRDSTDSLLHWPTSDVATECSNMQQRTSTSDGFRISVSSTPSCSSGGSGPDDIESLGDVYIWGEVWTDGASPNTLGCQVALMTDVLVPKPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEEYGGRLGHGIDKDFYHPHLVEFLSVQNVDFIACGEYHTCAISTSGDLFTWGDGAHNAGLLGHGSDVSHWIPKRVTGPLEGLQVLSIACGAWHSALATSNGKLFTFGDGTFGVLGHGDRKNVSYPKEVQSLSGLKTIKVACGVWHTAAIIEVMGHQGSNILSKKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGHTLTVALDTSGFVFTMGSTIYGQLGNPLSDGKMPTKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIENRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATEIGSASTSNRKPTPPRQSLDGRERLDRGEVRSSRILMSSITEPVKFLEIWGNKIESRHDFSSIAQTPQSILEFKDVAFPCSLRPIHNTFKPTSVTSSPPRTPPANLRPASPYIRRPSPSRSSTLGFSRSMIENLRKSNELINQELSKLQNQIRSLKQKNDMQDMEIHKLKKNVKEATLLTTEESSKHRLAREFIKSMTDQLEEVTQHLPPDSPDSETLRSIHAQAEDFLRENIESEASCSILSNLESNQETGYDTPALDINGSKLQEHKIIDPVGVEPSQDSGSSLQESNRSSVSSIEAATTPQSLENGSQSPDSMKQGRETESQVIEQFESGVYVTLVIRPSGRKAFKRVRFSKRKFDAQQAEEWWNKNKDMVFRKYSSPATNPAARGSSSNTQPLVEDNSETS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 950 996 - -
Pral1375g00003 1077 Gene3D - 176 341 IPR009091 -
Pral1375g00003 1077 Gene3D - 342 440 IPR009091 -
Pral1375g00003 1077 Coils Coil 803 844 - -
Pral1375g00003 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 681 IPR013083 -
Pral1375g00003 1077 Gene3D - 441 603 IPR009091 -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 499 IPR000408 -
Pral1375g00003 1077 CDD PH_PLC_plant-like 12 122 - -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 385 IPR000408 -
Pral1375g00003 1077 SUPERFAMILY FYVE/PHD zinc finger 604 670 IPR011011 -
Pral1375g00003 1077 SUPERFAMILY PH domain-like 13 123 - -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 279 330 IPR000408 -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 386 437 IPR000408 -
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 761 796 - -
Pral1375g00003 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 608 670 IPR017455 -
Pral1375g00003 1077 SUPERFAMILY RCC1/BLIP-II 219 605 IPR009091 -
Pral1375g00003 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 996 1050 IPR013591 -
Pral1375g00003 1077 Pfam Transcription factor BRX N-terminal domain 854 889 IPR027988 -
Pral1375g00003 1077 CDD FYVE_like_SF 614 666 - -
Pral1375g00003 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 424 434 IPR000408 -
Pral1375g00003 1077 Pfam FYVE zinc finger 604 670 IPR000306 GO:0046872
Pral1375g00003 1077 FunFam PH, RCC1 and FYVE domains-containing protein 1 191 439 - -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Pral1375g00003 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 265 275 IPR000408 -
Pral1375g00003 1077 ProSiteProfiles BRX domain profile. 996 1051 IPR013591 -
Pral1375g00003 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 874 - -
Pral1375g00003 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 547 568 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 489 507 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 281 297 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Pral1375g00003 1077 PRINTS Chromosome condensation regulator RCC1 signature 388 402 IPR000408 -
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 1050 1077 - -
Pral1375g00003 1077 SMART fyve_4 602 671 IPR000306 GO:0046872
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 676 698 - -
Pral1375g00003 1077 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 1055 1077 - -
Pral1375g00003 1077 MobiDBLite consensus disorder prediction 946 996 - -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 500 548 IPR000408 -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 330 381 IPR000408 -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 450 496 IPR000408 -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 279 327 IPR000408 -
Pral1375g00003 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 385 434 IPR000408 -
Pral1375g00003 1077 Gene3D - 13 132 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1375g00003 Pral-Chr1375 101981 111160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1375g00003 997 1051 Major Intrinsic Protein MIP AT1G31880 38.182 2.73e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1375g00003 - - qsa:O6P43_021414 1485.32