Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1373g00004 ATGTCGCATTCTGGGAAGCCCATTTCCGAGCTAGGAGTCGATGCTCTCAACGACCGATTCCACGGCTCTTTGAGCTGTGAGGCCAACAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCGGTTTCGCCATTGCGGACACGTCATAGTGTACCTGCTGCCAGTGCCAGCGGACTCACCACTACTAGTAGTAGTTCGAGTTCATCTGGATCGGTTTGCGGACGAAACGGGTACAAACCGGTCGCCAAACGATCTGATTACGATCCGAATAACCACTCCGGCGAGCTCTCCGGCTCCGGTGAGAACAGTCCGACCGCCGTAGGGAATGCCAGGAACTTCAAATCGCCTCAAGCAAGATCAGATTCCAAGACCACCCAACCATTAATTTACTCTGGCCAAAGCTCCTCTGTGAATTCGCCGCCGCCGAATTTTCTTCCCACAGGCAATATCTGTCCGTCCGGCAAGATTCTGAAGACCGCTGCCGCGGTCAGTCGGAGCTCCAGGACGGACGTTTTGGGTTCTGGGATAGCAAATTATGGCCATGGAAGCATAATGCGGGGCGGTGCGACTTCCAAAGGCAACGCTGGAGGAATGACCAGTGCGGCCAATGCGAGGCCGAGCGGTGGAGGTGTCGTCACTGACTCAATGAAGCGAGCGGTGGTGGATCCAGAAGAGGTGAAGAGAGCAGGGAACGAGCAGTACAAGAAGGGCCACTTCGCCGAGGCTCTGGGTCTGTACGATCGAGCAATTACATTATCCCCTGCTAACGCAGCCTATCGGAGCAACCGTGCAGCCGCATTGACTGGTTTGGGACGGTTGGCCGAGGCTGTGAGGGAGTGTGAAGAGGCTGTGAGGTTAGATCCCAATTATGGGAGGGCACATCAACGCTTGGCTTCTCTTTATCTACGGTTAGGGCAAGTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGCCACCTGATCCTTTTGAGTTGCAGAAATTGCAATTAGTCGAGAAGCATATCGGGAAATGTACTGATTCCCGGAAGATAGGTGATTGGAAAAGTGTGCTCAGGGAAATTGATGGTGCCATTTCTTCTGGAGTAGACTCTTCTCCTGAGCTCTTTATTTGTAGAGCAGAAGCCCTTTTGAAACTCCACCAAGTTGATGATGCTGAATCAAGTCTGTTAAACAATCCCAAATTAGAACCACATACTAACTTCACTTCACAGGCAAGATTTTTTGGGATCCTTTCTGAAGCTTATTCCTTCTTTGTGAGAGCTCAGATTGAGATGGCCCTGGGAAGATTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGGAACATCGAAGTTACCGTTTTGCTAAAAAATGTAAGGATGGTGGCGAGAGCTCGAGCGCATGGCAACGATCTTTTCAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCAAATTCTGTTCTTTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGACACTGGGAACAATCAATTGATGATTGCAATCAAGCTTTACGTTTCCAACCTAATTACACAAAAGCTCTTCTACGTAGGGCTGCATGTAATAGCAAGTTAGAAAGGTGGGCAGAAGCTGTCAAAGATTATGAGATCTTGCGGAGAGATCTTCCAGATGACAGTGAAGTAGCTGAAGCTCTGTTTCATGCCGTAGTGGCATTAAAGAAATCTCGTGGAGAGGAAGTGCATGATTTGAAATTTGGTGGTGAGGTGGAAGAAGTATCTGGTCTTGAGCAATTCAGAGCAGCAATAGCATTACCAGGTGTTTCCGTGGTCCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATCTCACCATTTATGGGTACATTATGTGGCCGGTATCCTTCTATTAACTTCCTTAAGGTGGATATTCAAGAATGCCCAACAGTTGCAACGGCTGAGAGCGTTAGAATTGTACCTACATTCAAGATCTACAAGAATGGCTATCGTGTGAAGGAAATTGTGTGTCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2088 0.4852 MSHSGKPISELGVDALNDRFHGSLSCEANKPDFRELDLGSPVSPLRTRHSVPAASASGLTTTSSSSSSSGSVCGRNGYKPVAKRSDYDPNNHSGELSGSGENSPTAVGNARNFKSPQARSDSKTTQPLIYSGQSSSVNSPPPNFLPTGNICPSGKILKTAAAVSRSSRTDVLGSGIANYGHGSIMRGGATSKGNAGGMTSAANARPSGGGVVTDSMKRAVVDPEEVKRAGNEQYKKGHFAEALGLYDRAITLSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLYLRLGQVENARKHLFCPGLPPDPFELQKLQLVEKHIGKCTDSRKIGDWKSVLREIDGAISSGVDSSPELFICRAEALLKLHQVDDAESSLLNNPKLEPHTNFTSQARFFGILSEAYSFFVRAQIEMALGRFENAVTAAEKAGQIDPRNIEVTVLLKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEQSIDDCNQALRFQPNYTKALLRRAACNSKLERWAEAVKDYEILRRDLPDDSEVAEALFHAVVALKKSRGEEVHDLKFGGEVEEVSGLEQFRAAIALPGVSVVHFEIASNPQCKQISPFMGTLCGRYPSINFLKVDIQECPTVATAESVRIVPTFKIYKNGYRVKEIVCPSRDMLEHSVRHYSF 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1373g00004 695 ProSiteProfiles TPR repeat profile. 495 528 IPR019734 GO:0005515
Pral1373g00004 695 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 692 IPR044534 -
Pral1373g00004 695 SUPERFAMILY TPR-like 366 553 IPR011990 GO:0005515
Pral1373g00004 695 MobiDBLite consensus disorder prediction 53 74 - -
Pral1373g00004 695 ProSiteProfiles TPR repeat profile. 415 448 IPR019734 GO:0005515
Pral1373g00004 695 Gene3D Glutaredoxin 580 693 - -
Pral1373g00004 695 SUPERFAMILY Thioredoxin-like 498 693 IPR036249 -
Pral1373g00004 695 FunFam TPR repeat-containing thioredoxin TTL4 587 694 - -
Pral1373g00004 695 Pfam Tetratricopeptide repeat 497 528 IPR001440 GO:0005515
Pral1373g00004 695 SUPERFAMILY TPR-like 224 313 IPR011990 GO:0005515
Pral1373g00004 695 MobiDBLite consensus disorder prediction 23 150 - -
Pral1373g00004 695 MobiDBLite consensus disorder prediction 91 144 - -
Pral1373g00004 695 Pfam Tetratricopeptide repeat 417 447 IPR019734 GO:0005515
Pral1373g00004 695 Pfam Tetratricopeptide repeat 229 289 - -
Pral1373g00004 695 SMART tpr_5 415 448 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 367 400 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 464 494 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 495 528 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 529 562 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 257 290 IPR019734 GO:0005515
Pral1373g00004 695 SMART tpr_5 223 256 IPR019734 GO:0005515
Pral1373g00004 695 CDD TRX_family 600 687 - -
Pral1373g00004 695 Gene3D Tetratricopeptide repeat domain 221 579 IPR011990 GO:0005515
Pral1373g00004 695 Pfam Thioredoxin 601 686 IPR013766 -
Pral1373g00004 695 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Pral1373g00004 695 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1373g00004 Pral-Chr1373 26680 30849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1373g00004 460 605 U-box Gene Family AT3G07370 27.869 8.42e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1373g00004 - - qsa:O6P43_029173 1066.22