Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1369g00046 ATGGATGGGGCAAATAGATTATCTACCCATAAATTGGTACAGTGTCGGATATGTCATGATGAGGATGAAGACTCGAACATGGAGCCTCCCTGTTCTTGTAGAGGCAGTTTGAAGTATGCACATCGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATCTGTGAGATTTGCCAACAGCAATTCAAGCCTGGTTATACAGCACCGCCTCCACTATTCCATTATGGTAATTCCCCATTGAATTTTAGAGGTAACTGGGAGATATCCAGAAGGGATCTGCAAAATCATCAGTTCATAGATATGTTTGCTGCTGCTAATCGAGAACTCTCAGACACTGATGAGGAATACTCAGTACCCTCGACAGGGAGCCTGGTCTGCTTTCGCATTGTTGCAATTATTTTTATCGCTCTTCTTGTTTTACGCCATACCCTTCCAATCATACTCAGTGGAGGAGGGGAATACTCGTTGACTATTTATATGTTTCTGTTCATGAGAACAATCGCAGTACTTCTACCTGTATGTATAATGGTAAAGGTATTTACCATTATCCAAAGGAGACGATTCCAGGATCAGTACTCCTCTATTCTGCAACATGAGGAGAATGAGTTGGAACAGCCTCAGTCTCGTGTCATTCATATCTTGTAA 651 0.4163 MDGANRLSTHKLVQCRICHDEDEDSNMEPPCSCRGSLKYAHRKCVQRWCNEKGDTICEICQQQFKPGYTAPPPLFHYGNSPLNFRGNWEISRRDLQNHQFIDMFAAANRELSDTDEEYSVPSTGSLVCFRIVAIIFIALLVLRHTLPIILSGGGEYSLTIYMFLFMRTIAVLLPVCIMVKVFTIIQRRRFQDQYSSILQHEENELEQPQSRVIHIL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1369g00046 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 191 IPR033275 -
Pral1369g00046 216 Pfam Protein of unknown function (DUF3675) 66 181 IPR022143 -
Pral1369g00046 216 SUPERFAMILY RING/U-box 11 65 - -
Pral1369g00046 216 SMART ringv_2 14 61 IPR011016 GO:0008270
Pral1369g00046 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Pral1369g00046 216 CDD RING_CH-C4HC3_MARCH 15 61 - -
Pral1369g00046 216 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Pral1369g00046 216 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Pral1369g00046 216 FunFam Zinc finger family protein 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1369g00046 Pral-Chr1369 456976 461723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1369g00046 14 61 C3H Transcription Factor Family AT2G37950 49.020 1.69e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1369g00046 - - qsa:O6P43_005661 298.901