Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1369g00036 ATGCCCAAATCCCAAACCCTAAGTTCGCTTGAGCTCTTCCACAGTGCTTTCCAACGCCTAAGGTCGTCGCCTCCCTCTCAGTCAGTCTCTCTCCAGCCCTCCCACTCCCCTCTTCCGCCGTCTTTCCCCCAGTATAAACTCATCCCCAAAACCCGGTTTTTGGTGGACGCATTCCGCCATGCCGGCGATTACTCTGTTGCCTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCTCTAATTGGTCTAAAGGCATTGTTTATTGCTCCAACACCACTGCTCGACTTGTCGTTGAAGTGCTCGGGGTTCCTTCGAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCTGTTGAGATTGATGGGTGTGAAGTCACTCTTATTGATGCGAATCATTGCCCTGGGGCTGTGCAATTCTTGTTTAAAATTCCGGGTGTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTTTCTAAGGCAATGAAGTCAGAGCCTTTACTTGCTGCATATGTTGGTGCCGATGCCGTATTTTTGGACACAACCTATTGTCACCCAAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCTTATATAGTTGATGTAGTTGAGAGGGCTGAAAATGAAAATGATGGTTCTATTGGGAATGTTCTGTTCCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAGGCGGGGACTTTACAGTTGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGACCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAAGTCGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAATTTACTGTGAAGTCGAAGGATTCATTTCAGATTCATCTTGTACCATATAGTGAACATTCTAACTATGATGAGCTCAGGGAATACGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACAGTAGGTGTAGATGTTGACAAAACTGACAGTAAACATGTGGAGAAGATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGGAATTTTTAAAGGGATTTCATTTTACATCTAGTGAAGGGGGCTTCAAGTTTGACAAGGATGATAATGATGCCATGAAGCCAGGGCAGGACATGGAGGCAGAAGTGAAGTTATTTGACAAGGGAGATGATAAGAGTATTAATCCAGATATTTCTCTAAATTTGTCTTCTACTCTTGAGGAACCTGACTTGCGGGATCCCACATCACTAAAGGATGAGGAAACAGAGAAGATCGGTCAAGAGATGTCTTGTTATTTGCCCGCATGGGTGACTCAGGGACAAGTTCTAGAGCTGATCAGCAATGCAAGGGGCAATGTGGTTGAAGCTGTTTCTAGTTTCTTTGAACGTGAAACTGAATTTCATGATCAAGTATTTTCCTGTCAAACGTCTGTTTCTGCATCCACATGCTTATCCGATGGCAGTGATTTGCTTTCAATAGCCCCCGTTGTTAGTAGTAAAACTTGCTTGAGTGTTGACATTTCACCAAGTCAAGACTTTAAGTTATCCGCCCCGAGAAATTCAGTAGCAAGTAGCATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAAACAAGAAAGTAAAAGTCCATACAAAATCAGAATCAAGTGGGCCAAAACAGTCCAGGATAACAAAATTCTTCACTAAAGCCTTGCCTGACATCACCCAATCTGGTAATTTTGAAGCCAGTACTGATCAAAGCCCTAAAGATGAAAACTTGCTACAATTTGATGTTGAAAAAGCATATGAGGATGAGATCAACCAGTTCATGCAGATAATAAATGGCGATGAATCATTAAAAAGTTATGCTATCACAATAATTGAGAAGACGAAAGGAGATCTAAATAAGGCATTGGACATATATTATCGTAATCCTGGGAATTTTGCTGAGAATGAAAAATCAGTTCAACTTGAGTGCAAAGTGGACAACTCTTCGGAAAGGAAATGTGTGTCACAGGAATTAAGATCCACACCACATGATATTTCTGTGCGAAGCATATCCAGAGAGAGTGTAGATGCAACTCTTGTACCTCTACCACCTAAAGAATACAACCCTAAAGAACACGCGTGTTGGAGAGATGGAGAGTCTGCGCCATATTTACATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTGTACCTGTGCACAAGTAAAATTGCTGCTGACCATGAAAATAAGGAATTAAATATTGGTGGAAGTCTGATTACTGCAGCACTAGAAGAGGCATGTGGAACAACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGTGACCTTGGTGATGTTGCTCAAGAGTGTCGGCAAACACAGAGATTGCTCGCTCCTCCAACACCACTTCTGATTAAAGATGTTTTCTCTGCACTTCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAACATAATTGTAAATCTCATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGGACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCCCAAGCTGTCTTTATGAATTCATGCCCTGCTTTACACCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCAGCGGAAATTGTTGAAGCATATAACATACTCCCAAATTTGGATCTTCTAATACCATCTCTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAAGATCACTAATGGCATTCCCCAAGTCCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATACAAGTATGTCCTATTCTTCATATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGATCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACATAATCAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCTGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTTCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTACTACAGAGAGCATAAAGGTGGACGTTTGCCTGTTTGTCTTTGACATCATGTTTGCTAATGGGCAACAAAATGCTCATGGAGCATAG 3468 0.4144 MPKSQTLSSLELFHSAFQRLRSSPPSQSVSLQPSHSPLPPSFPQYKLIPKTRFLVDAFRHAGDYSVAYFLSHFHSDHYTGLGSNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVEIDGCEVTLIDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKSEPLLAAYVGADAVFLDTTYCHPKFQFPSQEESVAYIVDVVERAENENDGSIGNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGDFTVDDSQTNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVEKMMKHFAGLVDETANKQEFLKGFHFTSSEGGFKFDKDDNDAMKPGQDMEAEVKLFDKGDDKSINPDISLNLSSTLEEPDLRDPTSLKDEETEKIGQEMSCYLPAWVTQGQVLELISNARGNVVEAVSSFFERETEFHDQVFSCQTSVSASTCLSDGSDLLSIAPVVSSKTCLSVDISPSQDFKLSAPRNSVASSISPAKRKRNSERKLNKKVKVHTKSESSGPKQSRITKFFTKALPDITQSGNFEASTDQSPKDENLLQFDVEKAYEDEINQFMQIINGDESLKSYAITIIEKTKGDLNKALDIYYRNPGNFAENEKSVQLECKVDNSSERKCVSQELRSTPHDISVRSISRESVDATLVPLPPKEYNPKEHACWRDGESAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTSKIAADHENKELNIGGSLITAALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALHKISLQTGNGSTLRKKNIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVFMNSCPALHQDGTAENLKEKLQGLSAEIVEAYNILPNLDLLIPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYVLFFIYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPASVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTTESIKVDVCLFVFDIMFANGQQNAHGA 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1369g00036 1155 CDD SNM1A-1C-like_MBL-fold 39 191 - -
Pral1369g00036 1155 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 970 1149 - -
Pral1369g00036 1155 MobiDBLite consensus disorder prediction 449 474 - -
Pral1369g00036 1155 FunFam DNA ligase 6 48 212 - -
Pral1369g00036 1155 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1150 - -
Pral1369g00036 1155 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00036 1155 Gene3D - 48 370 IPR036866 -
Pral1369g00036 1155 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 371 IPR036866 -
Pral1369g00036 1155 Coils Coil 959 979 - -
Pral1369g00036 1155 MobiDBLite consensus disorder prediction 576 608 - -
Pral1369g00036 1155 Gene3D - 746 1011 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00036 1155 Gene3D - 194 348 - -
Pral1369g00036 1155 Coils Coil 1155 1155 - -
Pral1369g00036 1155 Pfam ATP dependent DNA ligase domain 1012 1150 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral1369g00036 1155 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 994 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00036 1155 FunFam DNA ligase 1047 1153 - -
Pral1369g00036 1155 FunFam DNA ligase 194 348 - -
Pral1369g00036 1155 Pfam DNA repair metallo-beta-lactamase 270 373 IPR011084 -
Pral1369g00036 1155 Gene3D DNA ligase/mRNA capping enzyme 1012 1153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1369g00036 Pral-Chr1369 357949 368510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1369g00036 748 1150 Core DNA Replication Machinery Family AT1G08130 37.469 2.01e-85 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1369g00036 - - gmx:100807673 1566.59