Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1369g00035 ATGCCCAAATCCCAAACCCTAAGTTCGCTTGAGCTCTTCCACAGTGCTTTCCAACGCCTAAGGTCGTCGCCTCCCTCTCAGTCAGTCTCTCTCCAGCCCTCCCACTCCCCTCTTCCGCCGTCTTTCCCCCAGTATAAACTCATCCCCAAAACCCGGTTTTTGGTGGACGCATTCCGCCATGCCGGCGATTACTCTGTTGCCTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCTCTAATTGGTCTAAAGGCATTGTTTATTGCTCCAACACCACTGCTCGACTTGTCGTTGAAGTGCTCGGGGTTCCTTCGAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCTGTTGAGATTGATGGGTGTGAAGTCACTCTTATTGATGCGAATCATTGCCCTGGGGCTGTGCAATTCTTGTTTAAAATTCCGGGTGTTGATGGAAAGTGCGAGAGGTATGTTCACACGGGAGATTTTCGGTTTTCTAAGGCAATGAAGTCAGAGCCTTTACTTGCTGCATATGTTGGTGCCGATGCCGTATTTTTGGACACAACCTATTGTCACCCAAAGTTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGCTTATATAGTTGATGTAGTTGAGAGGGCTGAAAATGAAAATGATGGTTCTATTGGGAATGTTCTGTTCCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAGGCGGGGACTTTACAGTTGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGACCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAAGTCGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAATTTACTGTGAAGTCGAAGGATTCATTTCAGATTCATCTTGTACCATATAGTGAACATTCTAACTATGATGAGCTCAGGGAATACGTAAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACAGTAGGTGTAGATGTTGACAAAACTGACAGTAAACATGTGGAGAAGATGATGAAGCATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAGCAGGAATTTTTAAAGGGATTTCATTTTACATCTAGTGAAGGGGGCTTCAAGTTTGACAAGGATGATAATGATGCCATGAAGCCAGGGCAGGACATGGAGGCAGAAGTGAAGTTATTTGACAAGGGAGATGATAAGAGTATTAATCCAGATATTTCTCTAAATTTGTCTTCTACTCTTGAGGAACCTGACTTGCGGGATCCCACATCACTAAAGGATGAGGAAACAGAGAAGATCGGTCAAGAGATGTCTTGTTATTTGCCCGCATGGGTGACTCAGGGACAAGTTCTAGAGCTGATCAGCAATGCAAGGGGCAATGTGGTTGAAGCTGTTTCTAGTTTCTTTGAACGTGAAACTGAATTTCATGATCAAGTATTTTCCTGTCAAACGTCTGTTTCTGCATCCACATGCTTATCCGATGGCAGTGATTTGCTTTCAATAGCCCCCGTTGTTAGTAGTAAAACTTGCTTGAGTGTTGACATTTCACCAAGTCAAGACTTTAAGTTATCCGCCCCGAGAAATTCAGTAGCAAGTAGCATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTAAACAAGAAAGTAAAAGTCCATACAAAATCAGAATCAAGTGGGCCAAAACAGTCCAGGATAACAAAATTCTTCACTAAAGCCTTGCCTGACATCACCCAATCTGGTAATTTTGAAGCCAGTACTGATCAAAGCCCTAAAGATGAAAACTTGCTACAATTTGATGTTGAAAAAGCATATGAGGATGAGATCAACCAGTTCATGCAGATAATAAATGGCGATGAATCATTAAAAAGTTATGCTATCACAATAATTGAGAAGACGAAAGGAGATCTAAATAAGGCATTGGACATATATTATCGTAATCCTGGGAATTTTGCTGAGAATGAAAAATCAGTTCAACTTGAGTGCAAAGTGGACAACTCTTCGGAAAGGAAATGTGTGTCACAGGAATTAAGATCCACACCACATGATATTTCTGTGCGAAGCATATCCAGAGAGAGTGTAGATGCAACTCTTGTACCTCTACCACCTAAAGAATACAACCCTAAAGAACACGCGTGTTGGAGAGATGGAGAGTCTGCGCCATATTTACATCTTGCACGAACCTTTAACCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTGTACCTGTGCACAAGTAAAATTGCTGCTGACCATGAAAATAAGGAATTAAATATTGGTGGAAGTCTGATTACTGCAGCACTAGAAGAGGCATGTGGAACAACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGTGACCTTGGTGATGTTGCTCAAGAGTGTCGGCAAACACAGAGATTGCTCGCTCCTCCAACACCACTTCTGATTAAAGATGTTTTCTCTGCACTTCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAACATAATTGTAAATCTCATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGGACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCCCAAGCTGTCTTTATGAATTCATGCCCTGCTTTACACCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCAGCGGAAATTGTTGAAGCATATAACATACTCCCAAATTTGGATCTTCTAATACCATCTCTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAAGATCACTAATGGCATTCCCCAAGTCCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATACAAGTATGTCCTATTCTTCATATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGATCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACATAATCAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCTGAAATTGTGGGTATTGATAGGAAGAATGGATATAGGTATATGGCTTTTCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTACTACAGAGAGCATAAAGGTGGACGTTTGCCTGTTTGTCTTTGACATCATGTTTGCTAATGGGCAACAGCTATTGGGTTTTCCTCTCCGTGAAAGGCGAAAACATCTGAAGGATTTGTTCTACGACGAGAAACTTGGATATTTTGAATATGCAAAAGAAACAACTATTGAAGCAGATGATGCTTCATTAACCTGTGATGTCACGGTAACTAAGATAAACTCTTTCCTAGAAGACGCAATGCATTCGGCATGTGAAGGAATTATGGTGAAGTCGTTGGATGTTGATGCTGGATATTCTCCATCAAAGCGTACAGACACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCTGAAACAGAGGAGTACCAAAGCGTATGCCGTGTGATGTCTGGGTTCTCAGATGCCTTCTACATGGAGATGAAAGAATTCTTTTCCGAGGACAAGATATTGTCCAAAAAGCCACCATACTACCGAACAGCCGAGGTACCAGACAAGTGGTTCTGTCCTCTGCTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACCAAGCTGCCCTTGGTCTGGTTCATCCGTCTCGTGGCATCTCAATCAGATTCCCAAGATTTGTTCGCAATGTTTTGGACAGGAACCCCGAAGAATGCAGCACAGCTGCTGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTTGCAGCTGAAGATTAA 4206 0.417 MPKSQTLSSLELFHSAFQRLRSSPPSQSVSLQPSHSPLPPSFPQYKLIPKTRFLVDAFRHAGDYSVAYFLSHFHSDHYTGLGSNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVEIDGCEVTLIDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKSEPLLAAYVGADAVFLDTTYCHPKFQFPSQEESVAYIVDVVERAENENDGSIGNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGDFTVDDSQTNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVEKMMKHFAGLVDETANKQEFLKGFHFTSSEGGFKFDKDDNDAMKPGQDMEAEVKLFDKGDDKSINPDISLNLSSTLEEPDLRDPTSLKDEETEKIGQEMSCYLPAWVTQGQVLELISNARGNVVEAVSSFFERETEFHDQVFSCQTSVSASTCLSDGSDLLSIAPVVSSKTCLSVDISPSQDFKLSAPRNSVASSISPAKRKRNSERKLNKKVKVHTKSESSGPKQSRITKFFTKALPDITQSGNFEASTDQSPKDENLLQFDVEKAYEDEINQFMQIINGDESLKSYAITIIEKTKGDLNKALDIYYRNPGNFAENEKSVQLECKVDNSSERKCVSQELRSTPHDISVRSISRESVDATLVPLPPKEYNPKEHACWRDGESAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTSKIAADHENKELNIGGSLITAALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALHKISLQTGNGSTLRKKNIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVFMNSCPALHQDGTAENLKEKLQGLSAEIVEAYNILPNLDLLIPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYVLFFIYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPASVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVTTESIKVDVCLFVFDIMFANGQQLLGFPLRERRKHLKDLFYDEKLGYFEYAKETTIEADDASLTCDVTVTKINSFLEDAMHSACEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDAFYMEMKEFFSEDKILSKKPPYYRTAEVPDKWFCPLLVWEIRGAEFTVSPVHQAALGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFHSQTRKMDVAAED 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1369g00035 1401 CDD OBF_DNA_ligase_I 1247 1390 - -
Pral1369g00035 1401 CDD Adenylation_DNA_ligase_I_Euk 1003 1241 - -
Pral1369g00035 1401 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 994 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00035 1401 Gene3D - 1022 1242 - -
Pral1369g00035 1401 Pfam ATP dependent DNA ligase domain 1012 1238 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral1369g00035 1401 Gene3D - 194 348 - -
Pral1369g00035 1401 FunFam DNA ligase 1047 1178 - -
Pral1369g00035 1401 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 371 IPR036866 -
Pral1369g00035 1401 Pfam ATP dependent DNA ligase C terminal region 1264 1368 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pral1369g00035 1401 FunFam DNA ligase 1243 1400 - -
Pral1369g00035 1401 Gene3D - 1243 1400 IPR012340 -
Pral1369g00035 1401 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 973 1239 - -
Pral1369g00035 1401 CDD SNM1A-1C-like_MBL-fold 39 191 - -
Pral1369g00035 1401 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1393 - -
Pral1369g00035 1401 MobiDBLite consensus disorder prediction 449 474 - -
Pral1369g00035 1401 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00035 1401 Coils Coil 959 979 - -
Pral1369g00035 1401 FunFam DNA ligase 194 348 - -
Pral1369g00035 1401 Gene3D DNA ligase/mRNA capping enzyme 1047 1178 - -
Pral1369g00035 1401 Gene3D - 48 370 IPR036866 -
Pral1369g00035 1401 Gene3D - 746 1014 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral1369g00035 1401 MobiDBLite consensus disorder prediction 576 608 - -
Pral1369g00035 1401 FunFam DNA ligase 6 48 212 - -
Pral1369g00035 1401 Pfam DNA repair metallo-beta-lactamase 270 373 IPR011084 -
Pral1369g00035 1401 NCBIfam ATP-dependent DNA ligase 824 1388 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pral1369g00035 1401 SUPERFAMILY Nucleic acid-binding proteins 1247 1391 IPR012340 -
Pral1369g00035 1401 ProSiteProfiles ATP-dependent DNA ligase family profile. 1129 1276 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1369g00035 Pral-Chr1369 355897 368510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1369g00035 748 1391 Core DNA Replication Machinery Family AT1G08130 39.009 2.16e-161 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1369g00035 - - gmx:100807673 2010.73