Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1369g00020 ATGGGTCGAAGAAAATTGACGATGAAGACCCTCCAGAGCAGGAATGCTCGCCGGGCTTTGTTTGAGAGGAGGAAGAAGGGTTTATTGAAGAAAGCTTCTGAACTTTCCACACTCTGTGGGATTGATGCCTGTGTGATTATCTTCCCTCCTCCAGATTCTGAAAACCCTAAAGCTGAGACCTTTCCCCAGGATCCCACACAGTTGATTCGCAATCTGCAAGAGTATAACGCCAAGAAGAAATGCCCCGAGAAACGAAGAAAGAACTACGATCTCCGTGAGTTCTTCACTGATAGGAAGAACCAGGTTGAAGCTGAGACCTCCGGAGTCCGTGAACAGAGATTGAAGATGTTGTGTCCAACCTGGGATGACAGCTTTGACAACCTGGGAGAGGATCAGATGAGGATGTTTATTGCTGCGTTGGATTGTAAGCTCCAAGAGTGTGATCAGACAATTGGGTTGCTGAACGCAAAGAAATCAGAGATTCCTGTGGTTCCAAATATGAGTGATGAAGCCAATGTTGTATCTGATCCAATAAAGCGACTTATTGGTGATGATAACACTGACCTGATGGAATCATACCCTCTTCATGCCCAGATGCTTGGGTTTGATTCAACGTGGGATGACAGCTTCAAGGACCTAGGAGAGAAGCAGCAGGGTATGTTCAATGATTCAATATTAGATTCTGTGCTTCAAGACTGTGATTGTCAAATGACTGACTTGTTCTAA 726 0.4504 MGRRKLTMKTLQSRNARRALFERRKKGLLKKASELSTLCGIDACVIIFPPPDSENPKAETFPQDPTQLIRNLQEYNAKKKCPEKRRKNYDLREFFTDRKNQVEAETSGVREQRLKMLCPTWDDSFDNLGEDQMRMFIAALDCKLQECDQTIGLLNAKKSEIPVVPNMSDEANVVSDPIKRLIGDDNTDLMESYPLHAQMLGFDSTWDDSFKDLGEKQQGMFNDSILDSVLQDCDCQMTDLF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1369g00020 241 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral1369g00020 241 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Pral1369g00020 241 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Pral1369g00020 241 PANTHER MADS BOX PROTEIN 3 127 - -
Pral1369g00020 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1369g00020 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1369g00020 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1369g00020 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1369g00020 241 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral1369g00020 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1369g00020 Pral-Chr1369 183596 184425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1369g00020 1 146 Type I MADS-box Gene Family AT5G55690 30.464 1.68e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1369g00020 SRF-TF 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1369g00020 - - pcin:129304854 335.495