Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1353g00005 ATGGGTGTGATGATATTGGTATTGTTACTATGCTTTGCTATAGCTTGCTCGCAGCAGATTAATATGATAGAAGAGGAGAAACGAGCTCTGTTTCAGACCAAATGGTGGGATTTTACCGATAACTTCTCAGACGACCCTTGTAACTGGCAAGGCATATATTGCAATGAATTTGGAAGCGTTATTGGGATGAGTCAGCCAATGATCACTCCAGATGACCCTCGGCTAGCAGATTTAAACCTCACTACATTTCCCAATCTACAACATTTGGGTCTTCGTAGAATGGGTTTGATAGGTGCTATTCCGACTCAGATAGCAACTCTTCATAATCTCAGTACCATACCAACTCAAATTGGAGTTCTTCAAAGTCTTATCTCTTTAGACTTATCTAACAACAATATTAATGGTATCATTCCAACTCAAATTGGAGCTCTTCCAAATCTCTCTTTTCTAGACTTGTCTTACAACAATATTATTGGTACCATTCCAACTCAAATTGGAGTTCTTCATAGTCTTATCTCTTTGGACTTGTCTAACAACAATCTTAATGGTACCATTCCAACTCAAATTGGAGTTCTTCATAGTCTTATCTCTTTGGACTTGTCTAACAACAATCTTAATGGTATCATTCCAACTCAAATTGGAGCTCTGCCAAATCTCACTCATCTAGACTTGTCTTACAACAATATTATTGGTACCATTCCAACTCAAATTGGAGTTCTTCATAGTCTTATCTCTTTAGACTTGTCTAACAACAATCTTAGTGGCACCATTCCAACTCAAATTGGAGTTCTTCATAGTCTTATCTCTTTGGACTTGTCCAACAACAATCTTAATGGTACCATTCCAACTCAAATTGGAGTTCTTCATAGTCTTATCTCTTTGGACTTGTCTAACAACAATCTTATTGGTGCCATCCCCACTTTGATTTTTAATTTGATAAGTTTAGAATACTTTGATGTTTCTCAAAATCAGTTAAGTGGCAGCATACCAGAACAAATTGGAAATTTCACCAATCATCTTTCTAATCTAGATATCTCCCAAAATAATCTAAGTGGAAAAGTGCCATACATTTCAAATTTTCTACAATTTTGTGGTAATTTTAGTCACAACCAATTTGATGGAATATTACCATCTGACATATGCACTTCCCCATCAGACTGTAGCATTGATTTGAGCTACAATAATATCTCTGGTACTATACCTAGAGAACTTGGTAGACTTCACTACATCAACTTGTCATACAATCTTCTCAGCAGTTATGTTCCAAGTGAAGTTTATTGTTGTTTCCCCCATGACATTTTAGATGGGAATGAAGAATTACTTGGTCCAGAGATTCATGATTCTTTTAAGGCTCCAAAGTCTTTATTATTGAAAATCTTTATTCCTTCAACAATTTTTCTTGTCATCATATTTGTTGTCGGTTTCATTTTACTTCAATGGTTCAAAAGGAACAAGAAATCCATAAGTGAGACAAGAGAGGGAAAAAATGGGGATTTGTTTTCCATATGGAATTATGATGGAAACATTGCATATAAAGATATCATTGAAGTAACAGAGGACTTTGACATCAAGTATTGTATTGGAACCGGTGCCTATGGAAGTGTTTATAGAGCACAGCTTCCTAGCGGCAAAATTGTGGCATTGAAAAAACTTCACAAAAGAGAATATGGAAACACATCTTTTGCCAAGAGTTTTCACAATGAAGTAAAGATGTTGAGTGAAATTCGACATCGCAATATCGTAAAGCTTTATGGTTTTTGTTTACATAATCAATGCATGTTTCTCATCTATGAATACATGGAAAGAGGTAGCCTTTTTTATGTGTTGAATAATGATGATGAAGCTAAAGAATTAGATTGGAGTAAGAGAGTAGATGCCATCAAAGGAATAGCAAATTCTTTGTTTTACCTTCATCATGAATGTGCCCCTGCAATTATCCATCGAGACATAACAAGTAGTAATGTGTTATTGAACTCAAAGATGGAGGCATTTCTATCTGACTTTGGCACTGCTAGAATCATTGATCCAAATACATCTAATCAAACTCTTCTAGTTGGTACTTATGGTTATGTTGCTCCAGAGCTCGCATACACCTTAGTTGTAAATGAAAAATGTGATGTTTATAGTTTTGGAGTGGTGACAATGGAAACAATCATGGGAAGACATCCTGGAGATTTGATATCATCTTTGTCAAAGACATATTCTGGAAGCATTTGGCTAAAAGATGTGTTAGACTTACGTATCCCATTGCCATCACGGAAAGATGCAAGAGATGTGACTCTTTTGGTCACAATAGCATTAGCATGCTTGAATCCATCTCCCCAGTCTCGACCATCAATGCAACAAGTGTCTCGAAGGTTTTCATCCTCCAATATGCCATTAGCCATTCCTTTCAATGATATTTCGATCCAACATTTAATGAATCAAAATGTGTAA 2436 0.3584 MGVMILVLLLCFAIACSQQINMIEEEKRALFQTKWWDFTDNFSDDPCNWQGIYCNEFGSVIGMSQPMITPDDPRLADLNLTTFPNLQHLGLRRMGLIGAIPTQIATLHNLSTIPTQIGVLQSLISLDLSNNNINGIIPTQIGALPNLSFLDLSYNNIIGTIPTQIGVLHSLISLDLSNNNLNGTIPTQIGVLHSLISLDLSNNNLNGIIPTQIGALPNLTHLDLSYNNIIGTIPTQIGVLHSLISLDLSNNNLSGTIPTQIGVLHSLISLDLSNNNLNGTIPTQIGVLHSLISLDLSNNNLIGAIPTLIFNLISLEYFDVSQNQLSGSIPEQIGNFTNHLSNLDISQNNLSGKVPYISNFLQFCGNFSHNQFDGILPSDICTSPSDCSIDLSYNNISGTIPRELGRLHYINLSYNLLSSYVPSEVYCCFPHDILDGNEELLGPEIHDSFKAPKSLLLKIFIPSTIFLVIIFVVGFILLQWFKRNKKSISETREGKNGDLFSIWNYDGNIAYKDIIEVTEDFDIKYCIGTGAYGSVYRAQLPSGKIVALKKLHKREYGNTSFAKSFHNEVKMLSEIRHRNIVKLYGFCLHNQCMFLIYEYMERGSLFYVLNNDDEAKELDWSKRVDAIKGIANSLFYLHHECAPAIIHRDITSSNVLLNSKMEAFLSDFGTARIIDPNTSNQTLLVGTYGYVAPELAYTLVVNEKCDVYSFGVVTMETIMGRHPGDLISSLSKTYSGSIWLKDVLDLRIPLPSRKDARDVTLLVTIALACLNPSPQSRPSMQQVSRRFSSSNMPLAIPFNDISIQHLMNQNV 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1353g00005 811 Gene3D Ribonuclease Inhibitor 365 451 IPR032675 -
Pral1353g00005 811 SUPERFAMILY Protein kinase-like (PK-like) 505 785 IPR011009 -
Pral1353g00005 811 Gene3D Ribonuclease Inhibitor 249 364 IPR032675 -
Pral1353g00005 811 Gene3D Ribonuclease Inhibitor 21 109 IPR032675 -
Pral1353g00005 811 FunFam Leucine-rich repeat receptor protein kinase MSP1 483 599 - -
Pral1353g00005 811 Pfam Protein kinase domain 525 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1353g00005 811 ProSitePatterns Tyrosine protein kinases specific active-site signature. 645 657 IPR008266 GO:0004672|GO:0006468
Pral1353g00005 811 Gene3D Transferase(Phosphotransferase) domain 1 600 794 - -
Pral1353g00005 811 Pfam Leucine rich repeat 171 229 IPR001611 GO:0005515
Pral1353g00005 811 Pfam Leucine rich repeat 117 157 IPR001611 GO:0005515
Pral1353g00005 811 Gene3D Phosphorylase Kinase; domain 1 483 599 - -
Pral1353g00005 811 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 206 789 - -
Pral1353g00005 811 SUPERFAMILY RNI-like 113 357 - -
Pral1353g00005 811 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Pral1353g00005 811 FunFam MDIS1-interacting receptor like kinase 2 600 793 - -
Pral1353g00005 811 SMART LRR_typ_2 216 238 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 192 215 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 264 286 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 288 312 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 144 166 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 168 190 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 240 262 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 404 428 IPR003591 -
Pral1353g00005 811 SMART LRR_typ_2 120 143 IPR003591 -
Pral1353g00005 811 PRINTS Leucine-rich repeat signature 195 208 - -
Pral1353g00005 811 PRINTS Leucine-rich repeat signature 216 229 - -
Pral1353g00005 811 ProSiteProfiles Protein kinase domain profile. 521 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1353g00005 811 SUPERFAMILY L domain-like 367 427 - -
Pral1353g00005 811 Gene3D Ribonuclease Inhibitor 110 248 IPR032675 -
Pral1353g00005 811 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 111 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1353g00005 Pral-Chr1353 31508 42945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1353g00005 83 693 Receptor kinase-like Gene Family AT4G08850 36.084 1.70e-129 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral1353g00005 Pkinase 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1353g00005 - - pcin:129297054 854.744