Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1351g00001 | ATGTCGGTTCTAATCGTCACTAGCTTAGGAGACATAGTGTTGGATTTGTACACCGATAAATGCCCCTTGACGAGTAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTCTATTTCACACGGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATTGGGAGTGGTGGTGATTCTGTATACAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATACATATTGATTTAAAACATTCGAAGACTGGTACAGTTGCCATGGCTAGTGCCGGAGAGAACCTGAATGCCTCCCAGTTCTACATCACTCTGCGTGATAATCTTGATTACCTTGATGGAAAGCACACTTGGGAGACCTATAAAAATATCAGAATCAAGCACACTTACATCTTGGATGATCCTTTTGACGATCCTCCTCAGCTAGCTGAGTTTATTCCTGATGCTTCACCAGAAGGGAAGCCAAAAGATGAGATTCTTGATGAAGTTCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATCCAGCAGAGCTTGAGGAGGTTATTAGGAGAAAGGAAGCACATTCTAGGGCTGTTGTGCTTGAGAGTATTGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGATAACGTGCTATTTGTTTGCAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTTGTGTCGGCTGAAATCATCCGTGATCAGAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAGCAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTCAGTCAGAGTGTGGCCAAACTATGGTCACAATATAGGCGCAAAGATCAAACTGGTAAAGGTAATGGCTGCTTCAAATGTGGTTCTACAAACCATATTGCCAAAGATTGCACTGAGGATGGTAAGAATAACCAAACGGCAAAATACATCTTGAAGGACGACAATGCTCAACGTGGTGGTGATGATGCAAGGTATGAAATGGTTTTTGATGGAGATGGTGAAGAGAGTCCAACGCAAGGAAAGGGACACAGAAGGCACGACAAGGATGAGCCAGTTGAGAGAAAAAGTATGCATATGGGTCACAGGGATCAAGAGATGGTAGGCTCAGGCAGCAGAGATAGATATGGTGATAGAAACAAAGGAAGATATGAAAGAGGTGCAAGAGATGTGGATTCCCGTGCAGAGAGGAAAGATGGGGAAAAGTATATAGATAGACATAGAGATGATGATGGTTATGGTCGGAAAGATGATCGAGACTCTAGGAGGAGATATGAGGATGATCGCCATACAGAGAGACGGGCTGGTGGAGATCATAGGCGAAAAATGGATACTGGCCATGTCGAGAGAAGGGATGACAAGGACAAGGAGTACAACAGAGATAGTGAGAAGAGAAGGAAGGGTGGTTCAGGTGAAGATGACCATGAAGACAGGAGGAGAAAGGATGACAGAGATCATAGGGCGAAACGAAGAAGACCGAGGCAGGCAAGATGCGAAGAACGAGTCCAGACAAAGAAAAGGGAATGCAGATGA | 1632 | 0.4326 | MSVLIVTSLGDIVLDLYTDKCPLTSKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGIGSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDNLDYLDGKHTWETYKNIRIKHTYILDDPFDDPPQLAEFIPDASPEGKPKDEILDEVRLEDDWVPMDEQLDPAELEEVIRRKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQTGKGNGCFKCGSTNHIAKDCTEDGKNNQTAKYILKDDNAQRGGDDARYEMVFDGDGEESPTQGKGHRRHDKDEPVERKSMHMGHRDQEMVGSGSRDRYGDRNKGRYERGARDVDSRAERKDGEKYIDRHRDDDGYGRKDDRDSRRRYEDDRHTERRAGGDHRRKMDTGHVERRDDKDKEYNRDSEKRRKGGSGEDDHEDRRRKDDRDHRAKRRRPRQARCEERVQTKKRECR | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1351g00001 | 543 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 92 | 107 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral1351g00001 | 543 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral1351g00001 | 543 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral1351g00001 | 543 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 4 | 124 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral1351g00001 | 543 | Gene3D | - | 173 | 302 | IPR012677 | - | |
| Pral1351g00001 | 543 | CDD | RRM_PPIL4 | 217 | 299 | - | - | |
| Pral1351g00001 | 543 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 220 | 298 | IPR000504 | GO:0003723 | |
| Pral1351g00001 | 543 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 222 | 292 | IPR000504 | GO:0003723 | |
| Pral1351g00001 | 543 | ProSiteProfiles | Zinc finger CCHC-type profile. | 318 | 333 | IPR001878 | GO:0003676|GO:0008270 | |
| Pral1351g00001 | 543 | MobiDBLite | consensus disorder prediction | 361 | 516 | - | - | |
| Pral1351g00001 | 543 | MobiDBLite | consensus disorder prediction | 361 | 543 | - | - | |
| Pral1351g00001 | 543 | Gene3D | - | 310 | 389 | - | - | |
| Pral1351g00001 | 543 | SMART | c2hcfinal6 | 317 | 333 | IPR001878 | GO:0003676|GO:0008270 | |
| Pral1351g00001 | 543 | Gene3D | - | 1 | 145 | IPR029000 | - | |
| Pral1351g00001 | 543 | SMART | rrm1_1 | 221 | 294 | IPR000504 | GO:0003723 | |
| Pral1351g00001 | 543 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | 128 | 524 | IPR035542 | - | |
| Pral1351g00001 | 543 | FunFam | Peptidyl-prolyl cis-trans isomerase | 159 | 300 | - | - | |
| Pral1351g00001 | 543 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 316 | IPR035979 | GO:0003676 | |
| Pral1351g00001 | 543 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 167 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral1351g00001 | 543 | MobiDBLite | consensus disorder prediction | 528 | 543 | - | - | |
| Pral1351g00001 | 543 | SUPERFAMILY | Cyclophilin-like | 1 | 155 | IPR029000 | - | |
| Pral1351g00001 | 543 | CDD | cyclophilin_RRM | 4 | 146 | IPR035538 | - | |
| Pral1351g00001 | 543 | Pfam | Zinc knuckle | 317 | 333 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1351g00001 | Pral-Chr1351 | 1049 | 8987 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1351g00001 | 7 | 124 | U-box Gene Family | AT5G67530 | 39.831 | 1.31e-19 | 90.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1351g00001 | K12735 | - | gmx:100776900 | 751.51 |