Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1349g00015 ATGAAGAAGGAAGTGGACGGCGACGCTCCAGTTCTTCCTGAAAAAATCATCAGAAACATTCTCAAACGACTTCCAGTGAAATCCCTAGTCCGATTTCAATGTGTGTGCCGACATTGGAGAAATCTCTTCAAGACCGCATCTTTCATCGCAGACCACCTGCACCACTCAAATCATCAAAACCCTTATCTCCTTTTCCAACGGGATGGCTGGGATGATCCTTCGAACTTGTATTGGCTTGATTCCGAGATGCAAGTTCGGGATTTTCAGAACCCTCTTTTACTCGATTACTTGAAGCGTGGTAAGATCGTTGGTTCTAGCAATGGCTTGCTCTGTGTTGAAATCAACAAGCATGATGTGTCTCCTCATTTCCTTTTAGTGTGGAATCCAGCGATTAGAGAGGTTAGACTGGTGCCCGAAACTAATTTTCATGAGGATTATTATCTCTATTCTGTAGCATTTGGGTTCAGTCCAATTATTAATGATTACAAGATAGTGATATTGTATGTTAATGAGTATTATACTGAGCTTTCTGCCGTGAAGGTGTATTCTTTAAGCTCAGGGTCATGGAAGGAAGTAAAATTTAGGCTCAATCACAGTACATGTCTTCATTCTCATTGTGTCACTGTTAATGGTGTTATGTTTTGGTTGGGTTCAAAGCGGGTTGGGGAGGATCCAGATGATAATGAGGGTCTGATTGTTTCACTTGACCTAGCAACCGAAGCGTTTAGAGTGATCCCCATACCTGAGCATGACTTTTTTTCAACGCTTGCTGTGTATGAGGAAAAACTTGCAATGGTTTCTGGCATCAGAAGCACAGGGCATTCTGTTATCCATCTGTGGGTAATGGAGCAGGGTGTAGTAGCATCTGGGGAGAGATGGAATTGGACTAAGAAATATACCAGCAGCCCTTATCCATGCAAGTTATATCCCAGGACTATTTGGAGAAATGTAATTGTCTGCACGGATGACATGGAGGACGAATCCACCGCTGTTCTCTTCAATCTCACTACTAAAAGAATCAAGAAGCTGGCCATTAGCAAATGTGACGATGGTCATGATATTTTCAATTATGCTGAAAGTCTCGTACCAGTTGGAGGAATGAAATCATTTGCAAATTTTCTGTAG 1125 0.4204 MKKEVDGDAPVLPEKIIRNILKRLPVKSLVRFQCVCRHWRNLFKTASFIADHLHHSNHQNPYLLFQRDGWDDPSNLYWLDSEMQVRDFQNPLLLDYLKRGKIVGSSNGLLCVEINKHDVSPHFLLVWNPAIREVRLVPETNFHEDYYLYSVAFGFSPIINDYKIVILYVNEYYTELSAVKVYSLSSGSWKEVKFRLNHSTCLHSHCVTVNGVMFWLGSKRVGEDPDDNEGLIVSLDLATEAFRVIPIPEHDFFSTLAVYEEKLAMVSGIRSTGHSVIHLWVMEQGVVASGERWNWTKKYTSSPYPCKLYPRTIWRNVIVCTDDMEDESTAVLFNLTTKRIKKLAISKCDDGHDIFNYAESLVPVGGMKSFANFL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1349g00015 374 Pfam F-box domain 12 45 IPR001810 GO:0005515
Pral1349g00015 374 ProSiteProfiles F-box domain profile. 6 52 IPR001810 GO:0005515
Pral1349g00015 374 Pfam F-box associated domain 207 319 IPR013187 -
Pral1349g00015 374 SUPERFAMILY Galactose oxidase, central domain 121 346 IPR011043 -
Pral1349g00015 374 CDD F-box_AtFBW1-like 10 48 - -
Pral1349g00015 374 SUPERFAMILY F-box domain 10 71 IPR036047 GO:0005515
Pral1349g00015 374 NCBIfam F-box protein interaction domain 107 336 IPR017451 -
Pral1349g00015 374 Gene3D - 11 48 - -
Pral1349g00015 374 PANTHER BNAA05G37150D PROTEIN-RELATED 12 359 - -
Pral1349g00015 374 SMART fbox_2 12 52 IPR001810 GO:0005515
Pral1349g00015 374 Gene3D - 126 367 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1349g00015 Pral-Chr1349 107446 108570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1349g00015 180 332 Carbohydrate Esterase AT1G25141 25.153 3.52e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1349g00015 - - pcin:129286166 513.842