Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1343g00001 ATGCCAACTGGGTGGAGATTCTGTCCAGAAGATCATGAACTCATCAGAGATTATCTTTACAATAAAGTCATCCAACAACAATTACCTTTCGAAGGCTTAATCGCAGAGTGTGATCTTTATGGAAATGAGAATCCCTGGGAAATCTGGGAATGTTTCAGTGAATATGTGGTTAAATCAGTTCACTATGAAGATCTGTACGTATTCACAAAATTGAAGAGAAAGAATGCTGGAGCTAAGAACGTAGAGAGGAAGGTAGGATTAGGGTCTTGGGAAGGAGAAGCTATTGCCAAAGAGATCATAATCAACAATTCTAATAATATGAATCAAAGTGTGGTTATTGGATTCATGAAGAGGTTTCGGTTTGAGAAAAGTGGAACTCATCAAGATGGAAAATGGATCATGCACGAATATTCTCTTCATCCATCCCTCTTTCCTTCTAATTACCTCCATGTGAGTCTTTTCTCATTCAAAGTTTCATTCTCTTAA 486 0.3745 MPTGWRFCPEDHELIRDYLYNKVIQQQLPFEGLIAECDLYGNENPWEIWECFSEYVVKSVHYEDLYVFTKLKRKNAGAKNVERKVGLGSWEGEAIAKEIIINNSNNMNQSVVIGFMKRFRFEKSGTHQDGKWIMHEYSLHPSLFPSNYLHVSLFSFKVSFS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1343g00001 161 Pfam No apical meristem (NAM) protein 2 139 IPR003441 GO:0003677|GO:0006355
Pral1343g00001 161 SUPERFAMILY NAC domain 1 144 IPR036093 GO:0003677|GO:0006355
Pral1343g00001 161 Gene3D NAC domain 11 150 IPR036093 GO:0003677|GO:0006355
Pral1343g00001 161 ProSiteProfiles NAC domain profile. 1 156 IPR003441 GO:0003677|GO:0006355
Pral1343g00001 161 PANTHER NAC TRANSCRIPTION FACTOR 56 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1343g00001 Pral-Chr1343 15200 15685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1343g00001 1 145 NAC Transcription Factor Family AT3G04070 30.612 5.24e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral1343g00001 NAM 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1343g00001 - - pcin:129285581 194.897