Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1340g00001 ATGTCTGATAGTTATGAATACTCCACTAAGTTTCTATCATTTCAGTGTATTATCTTCTCCATGTTCTTCTTTCTTGTTGCTTCCTTTACATTTTCTGTTTCCGCTGCCATTGAAGATGGTGAAGCAAAAGCTCTGTTGAATTGGAAAGCCAGCCTTACTGAGCAAAGCCAAGCAACGTTGTCTTCGTGGAATAATGGCACTAATCTTTGCAAAAACTGGAAGGGAATTTCATGTGATGAAGAATCCATGTTTGTGATCAATATAAGTCTGTCAAATCTTGGCCTACAAGGTACACTTCACAGTCTTAGCTTTGCTTCATTTCCTAGTTTGCAGTATTTTGACCTGGGTTACAACCAATTTTATGGAAACATTCCCCAAGAGATTGGTAACCTATCCAGTATTTTGAGGTTCAATTTGTCAGAGAATCCTTTAATTACCGGTCCCATTCCTAAAGAAATAGGAGCTTTGAGCACTCTCAGTGTTCTTGATCTTAGTGTATGTAAGCTTACGGATAGAATACCCAGTGAAATTGGGAACTTGAGGAACCTGACGGATCTAGTGCTTGCTCGAAATTCTCTTTCTGGTTCCATTCCAGAAGAGATTGGAATGTTGAGTAGACTTTTACAACTTGATTTGGCTAGAAACTCCATGCTATCTGGTAGAATCCCATCATCAATTGGAAACTTGAACATGTTACAAGAACTTTATATCGATTTTTGCAATCTCTCTGGTCCTATACCAAATGAAATTGGAAAACTCGATTCTCTCAAGACAATTTATTTAGAAAGCAATAAACTTTATGGGCCAATCCCTCCCTCTATGGGGAACTTGACAGGTCTCGAGGAGTTGGTCTTGTCAAATAACAATCTTTCTGGTTTAATTCCTCAATCCATTGGAAACTTGATCAATTTACAAGAAATCTATCTAGAATATAACAATCTTTCAGGACCTATTCCTTCCACCATAGGAAACTTGACAAAGCTTGACACTCTAGTATTGATTGAGAACAACCTCAGTGGTCAACTTCCTCGAGAAATGAACAACATAAGTTGGTATAATTTACAAGTGGGTAATAATCATTTCCAAGGCCAACTGCCACAAGAAATTTGTCAGGGTGGGATGTTAATTAGGTTTGTTGCTCAAAATAACCAGCTCATTGGTCCCATTCCAACTAGTTTGAAGAATTGTTCTAGTTTAAGAAGACTCAGGCTTCAGGGTAATCAACTAGTTGATAATGTAACAGATGCTTTTGGAGTATATCCTGATTTGGACTTCATTGATCTAAGTGGAAATCAACTGTATGGCCACCTTTCATCCAGTTGGGGAAAGTGTCAAAATCTCAAGCAATTGTATGTTAACAATAACAAGCTTTCCGGTGATATACCACCAGAACTAGGGGAGGCAGCTAAGCTTGGTGAACTTGACTTGTCTTCAAATCATTTGTATGGACAAATTCCAAAAGAACTAGGCAAGTTGATAATGTTGACAAAACTATTGTTGAGCCACAATAACTTCTCTGGTAATGTTCCCTCAAATATAAGATCGCTTACTCAACTTGAAACATTAGAGTTGGCAGCAAATAATTTCTATGGCTTAATCACAAGAGAGCTTGGGGAATTAAAAAACTTAAAGTTCTTGAATTTGAGTAGAAACAAATTTGATGGAAGTATTGCCCTTCAGTTTGGTCAACTCCGAGAGCTTGAACAACTTGATCTTAGTGACAATTTGCTCAATGGAACAATACCATCAGCGCTTGGCATGTTACCCAAATTGCAAGTATTGAACCTCTCGCATAATGATCTCACTGGTGCTATTCCTTCTGGTTTTAGTGGATCAATGTCAACTTTGACTATTATTGACCTATCAAACAATCAATTAGAAGGCCTTGTTCCAAACAAACCAGCCTTTCAAACATTTGAAGGATTGAAGAATAATAAAGGTTTGTGTGGTAATGTCACTGGCTTACATCCTTGTAGTAATTCTCAAATGAGTCATAAGAGCAAAATCTTCTTGAAGATATTCCTCCCATTAGCAATACTACTATTAGTAGTGGTTGGAGCTTCTTTTATCTTTCTCCTACATGCAAGAAAAGCAAAAACCAAAGATGAAGAAGCACAATCACAGGACATTTATTTTGTATGGAGTTCCAACAGAGAAATATTGTATGAAAATATCATCGAAGCCACAATGAACTTTGATGATAGATATCTAGTTGGGAAAGGTGGCCAAGGAAGTGTTTATAAGGCCGAGTTGCCTACAGGTGATGTTGTTGCTGTAAAAAAGCTTCATTCCTTACCAATTGGGGAAATCTCTAACAAGAAAGCTTTCACAAGTGAGATTCGAGCTCTGACAGAAATCAAACATCGCAACATTGTGAAGTTGTATGGGTTTTGTTCCAACTCACGATTCTCCTTTCTGGTTTATGAGTTCTTGGAAGGTGGCAGCTTGGACAACATACTAAAGGATGAAGCACAAGCCACTAAGCTTGATTGGAAAAAGAGAGTGAATGCCGTTAAAGGTGTCGCTGCTGCTTTATTCCACATGCATCATGACTGTTCATTTCCTATTGTTCATCGTGATATATCAAGCAAGAATGTACTTCTAACTTCAGAATATGAAGAAGCTCACCTCATTGACTTTGGAACAGCCAAGTTTCTGAATCCTAACTCAAACAATATGACCACATTTGTTGGCACCTTCGGTTACGCTGCTCCAGAGATTGCTTATGTTATGGAAGCGAACGAGAAATGTGATGTTTACAGCTTTGGAGTGTTGACTTTGGAGATCGTTATGGGAATGCATCCCGGAGAGCTTATTTCATCTTTGATGGAGAAATCAACCACATATGATTTGCTATTAAAGGATGTGTTGGATCCACGACTTTTAGCACCCAGAAAATCAATCATTGATGAGGTTATTACAGTTGCAAAAATAGCATTTTTTTGTTTGAATGAGGATCCTCGTTCTCGTCCAACAATGGAACAAGTATCTAAGGATCTTGAACGGCAGCCAAAGTCTCATATGGAAGAACCATTAGTCGGCATCACAATTGGACAACTAATGAATGATTAG 3072 0.3802 MSDSYEYSTKFLSFQCIIFSMFFFLVASFTFSVSAAIEDGEAKALLNWKASLTEQSQATLSSWNNGTNLCKNWKGISCDEESMFVINISLSNLGLQGTLHSLSFASFPSLQYFDLGYNQFYGNIPQEIGNLSSILRFNLSENPLITGPIPKEIGALSTLSVLDLSVCKLTDRIPSEIGNLRNLTDLVLARNSLSGSIPEEIGMLSRLLQLDLARNSMLSGRIPSSIGNLNMLQELYIDFCNLSGPIPNEIGKLDSLKTIYLESNKLYGPIPPSMGNLTGLEELVLSNNNLSGLIPQSIGNLINLQEIYLEYNNLSGPIPSTIGNLTKLDTLVLIENNLSGQLPREMNNISWYNLQVGNNHFQGQLPQEICQGGMLIRFVAQNNQLIGPIPTSLKNCSSLRRLRLQGNQLVDNVTDAFGVYPDLDFIDLSGNQLYGHLSSSWGKCQNLKQLYVNNNKLSGDIPPELGEAAKLGELDLSSNHLYGQIPKELGKLIMLTKLLLSHNNFSGNVPSNIRSLTQLETLELAANNFYGLITRELGELKNLKFLNLSRNKFDGSIALQFGQLRELEQLDLSDNLLNGTIPSALGMLPKLQVLNLSHNDLTGAIPSGFSGSMSTLTIIDLSNNQLEGLVPNKPAFQTFEGLKNNKGLCGNVTGLHPCSNSQMSHKSKIFLKIFLPLAILLLVVVGASFIFLLHARKAKTKDEEAQSQDIYFVWSSNREILYENIIEATMNFDDRYLVGKGGQGSVYKAELPTGDVVAVKKLHSLPIGEISNKKAFTSEIRALTEIKHRNIVKLYGFCSNSRFSFLVYEFLEGGSLDNILKDEAQATKLDWKKRVNAVKGVAAALFHMHHDCSFPIVHRDISSKNVLLTSEYEEAHLIDFGTAKFLNPNSNNMTTFVGTFGYAAPEIAYVMEANEKCDVYSFGVLTLEIVMGMHPGELISSLMEKSTTYDLLLKDVLDPRLLAPRKSIIDEVITVAKIAFFCLNEDPRSRPTMEQVSKDLERQPKSHMEEPLVGITIGQLMND 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1340g00001 1023 Gene3D Ribonuclease Inhibitor 38 322 IPR032675 -
Pral1340g00001 1023 SUPERFAMILY Protein kinase-like (PK-like) 709 1001 IPR011009 -
Pral1340g00001 1023 FunFam MDIS1-interacting receptor like kinase 2 811 1006 - -
Pral1340g00001 1023 ProSiteProfiles Protein kinase domain profile. 732 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1340g00001 1023 Gene3D Phosphorylase Kinase; domain 1 693 810 - -
Pral1340g00001 1023 Gene3D Ribonuclease Inhibitor 335 662 IPR032675 -
Pral1340g00001 1023 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 348 662 - -
Pral1340g00001 1023 SUPERFAMILY RNI-like 314 630 - -
Pral1340g00001 1023 FunFam Nuclear pore complex protein NUP107 38 145 - -
Pral1340g00001 1023 FunFam Leucine-rich receptor-like protein kinase family protein 247 344 - -
Pral1340g00001 1023 Gene3D Transferase(Phosphotransferase) domain 1 811 1012 - -
Pral1340g00001 1023 Pfam Leucine rich repeat 561 601 IPR001611 GO:0005515
Pral1340g00001 1023 Pfam Leucine rich repeat 255 314 IPR001611 GO:0005515
Pral1340g00001 1023 PANTHER LEUCINE RICH REPEAT KINASE 2 298 1004 - -
Pral1340g00001 1023 FunFam Leucine-rich repeat receptor protein kinase MSP1 695 810 - -
Pral1340g00001 1023 SMART LRR_typ_2 492 516 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 613 638 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 180 204 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 277 300 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 444 468 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 107 131 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 564 587 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 301 325 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 588 611 IPR003591 -
Pral1340g00001 1023 SMART LRR_typ_2 540 563 IPR003591 -
Pral1340g00001 1023 PRINTS Leucine-rich repeat signature 567 580 - -
Pral1340g00001 1023 PRINTS Leucine-rich repeat signature 588 601 - -
Pral1340g00001 1023 Pfam Protein kinase domain 737 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1340g00001 1023 SUPERFAMILY L domain-like 53 344 - -
Pral1340g00001 1023 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Pral1340g00001 1023 FunFam Leucine-rich receptor-like protein kinase family protein 149 246 - -
Pral1340g00001 1023 ProSitePatterns Tyrosine protein kinases specific active-site signature. 856 868 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1340g00001 Pral-Chr1340 2693 5850 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1340g00001 25 905 Receptor kinase-like Gene Family AT4G08850 43.413 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral1340g00001 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1340g00001 - - pcin:129318235 1206.82