Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1336g00002 ATGGGAGAGAGTGCCAATCGTCACCAGCGACCGCCGGCAACGACGTCGTCCAGATTGGCTGTGAGGGGTGGAGGGGGAGAGATCGTGGAGGTTCAAGGCGGCCACATTGTTCGCTCCACCGGACGCAAAGACCGGCACAGTAAGGTGTGTACCGCTAAGGGACCCAGAGATCGGCGAGTTCGTCTCTCCGCTCATACCGCCATTCAATTCTACGACGTCCAAGATCGCCTTGGCTACGACCGCCCCAGCAAAGCCGTCGATTGGCTCATTAAGAATGCCAAAGCCGCCATAGATGAGCTTGCCAAGCTTCCTGCGTGGAACCCCCACACAACAAATCAAAATGCTCAGCAGGAGAAGGATCGACACCAGAATCAGCAGGTGAACGAGGACGAGAACCTCATTGGAGTTGACCGTTCCGCGGTCGATGCTATGGATTCTTTTGGCCGGAGAACAGGTTCGGCCGCAGATAATGGCGGGAGGATTATGGAGCAATTCGATGAAAACCCTGACCGTGGCGGGTTGGATTTTCTACCGCCGACATTTGACACTGACATTGCTGACTCTATGAAGTCTTTCTTCCCCAGTGGGGAGTCAGCGCCGGAGACGGATTCTTCGTCGATTCAGTTTCAGAATTACTCACCAGATTTGCATTCGCTAACTAGTAGCGCCTGCCAGAACCAAGATCTACGGCTCTCGCTCCAGTCGTTGCAGGACCCGATTCTGCTTCACCAGGCTCAAGCTCAGACCCACCACCACCACCAGGGTGAGCAATTGTTCTCTGCGACGACCCCAGTGGGGTTCGATGGGGCTTCATTCCCAGTGGAGCATGATCGATTGAGTAGAATGGTAGCTTGGAATGGTGGTGCTACTGATACTGGTAATAGTGGCCATGGCGGAGACGGAGGACTTATCTTCAACCCGCAGTCGCCGATGCAGACTCCGCTGCAGCCACTGTTCAGTCGGAGCCAGTATCTTTCTCAGAGGGGTCCCCTTCAGTCCAGTAACACTCCTTTGATTCGTGCTTGGATAGACTCGTCAACCGCCTCCACGCCTGACCACAGCCACTATCTACCACCGACAATTCATCATCAATCTTCTATCTCCGGCGGCATCGGATTTGATTCTGATATCTTCTCCGGTTTTCACATTCCAGCACGAATCCAGGGTGAAGAGGAGTACGACGGCGTTTCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCTGTTGA 1230 0.5431 MGESANRHQRPPATTSSRLAVRGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELAKLPAWNPHTTNQNAQQEKDRHQNQQVNEDENLIGVDRSAVDAMDSFGRRTGSAADNGGRIMEQFDENPDRGGLDFLPPTFDTDIADSMKSFFPSGESAPETDSSSIQFQNYSPDLHSLTSSACQNQDLRLSLQSLQDPILLHQAQAQTHHHHQGEQLFSATTPVGFDGASFPVEHDRLSRMVAWNGGATDTGNSGHGGDGGLIFNPQSPMQTPLQPLFSRSQYLSQRGPLQSSNTPLIRAWIDSSTASTPDHSHYLPPTIHHQSSISGGIGFDSDIFSGFHIPARIQGEEEYDGVSDKPSSASSDSRC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1336g00002 409 MobiDBLite consensus disorder prediction 107 128 - -
Pral1336g00002 409 Pfam TCP family transcription factor 41 127 IPR017887 -
Pral1336g00002 409 MobiDBLite consensus disorder prediction 107 121 - -
Pral1336g00002 409 Coils Coil 112 132 - -
Pral1336g00002 409 ProSiteProfiles TCP domain profile. 42 100 IPR017887 -
Pral1336g00002 409 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 332 IPR005333 GO:0003700
Pral1336g00002 409 MobiDBLite consensus disorder prediction 390 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1336g00002 Pral-Chr1336 44760 46553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1336g00002 1 408 TCP Transcription Factor Family AT3G15030 48.611 2.59e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pral1336g00002 TCP 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1336g00002 - - qsa:O6P43_029159 405.216