LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1331g00011	ATGGCGATTCAAGGGGCAGCATCATCATCCCTTAGCTTTACCAAGTACAGATATGATGTTTTCTTGAGTTTCAGAGGCGAAGACACTCGCAAATCCTTCACTGTCATTCTCTACGAAGCTTTGCGCAAGAAGGGAATCAACGCCTTCATCGATGACAGGAAGCTCGGTAAAGGGGAACGAATCGCACCTTCGCTTCTTAAAGCCGTAGACAAATCCAGGATTTCTATTATTGTGTTCTCTGCAAACTACGCTACTTCCACATGGTGCCTTGATGAACTGGCTCACATCATTCGGTGTAAGAAGAAGAAGAACCAGGTGGTTATGCCAATATTTTACAAGGTGGATCCAATGGATGTCCAATATCAGAGAAATAGCTTTGAGGAAGCCATGGCTGCTCATGAAGCTGGGTTCATAAATGACCTGCAGAAAGTGCGAAAATGGAGGTCTGCGTTATTTGAAGCTGCTAGCTTGTCACCAGCATGGCTTTTCGAAGATGGGTATGAATTTGGGTTTATTGAAAGGATTGTTGGAGATGTGTATGCTAGGCTTCCTCCTAAACCACACCATAATGTAGAACACATGGTTGGACTTGAGCCTCGGATAGATGAAGTGATCTCACTTTTAAATAAATCTGACAATGGTGTCTGCATGTTGGGAATTCATGGAACTGGTGGAATTGGCAAAACAACCCTTGCAAAAGCTGTCTACAATTCAATATTCTACCAATTTGAAGGTGCATGTTTCTTGTTTGATGTCAATGAGGCATCAAAAAAATTCCAGGGCATTGTTAATCTTCAACAAAAGCTTATGTCTGATATTCTTGAGGAAAAGATCCTGAGATTTTGTAGTGCTGATGAAGGAATATCTAAAATAAAACACAGACTCTCTCATAAAAGAGTTTTGTTGGTTCTTGATAATGTGGATGAGATTGAACAGTTAGAACGACTTGCAGGGGGGTGTGATTGGTTTGGTTGTGGAAGCAAGGTCATTATAACAACAAGAAATAAGCAATTGCTCATTGCTCATAATGTTAAAAGAACATATGAATTGATGCAGCTAAATGATCATGACTCTCTTGAACTCTTTTGTTGGCATGCCTTTCACATGAGCCTACCTCCAAAAGGCTACCAACAGATGTCTAGTTATGTGATAAGTTATGCAAAGGGCCTTCCTCTGGCTTTAAAATTAATTGGTGCCAATTTAGCAGATAAAAACTTAGAGGAATGGCGGTCTACATTGGAACAATATGATCGTATCCCAGAAAGAACAATACATGAAGTACTAAAGATAAGCTATGACTGCTTACAAGATGGAGCTAAGACTGTATTCTTGGATATTGCTTGTTTCATTAGAGAGGAGATATTAGGTTCTCTTGATGAAATAGTAGACTCTTCTGATTATGGTGTAAGGTTTTATATTGAAGTGCTTATTGATAAATCTCTTATAGCTGTTACTGATACTGGTAGTTTACACATGCACGATCTGATAAAACAAATGGGTAGAGAGATTGTTAGGAAGGAGGCACAATCAAATCCAGGCAAACGTAGTCGATTATGGAATTATAAAGATGTTCTTAAAGTATTGCATGAAAATTCAGGAACTAGTAATATCGAAGGAATAATGTTTGATCCGCCTCAACAACAAGAAGTGGAGTGGAGTGGTATAGCATTTGAGAAAATGAATAATCTTAGAATCCTTATTGTCCGAAAGGCCCAATTTTCAACTGGTCCTAAATATCTTCCCAATAGTTTGAGATGGCTTGAATGGGAGGGATATCCTTCTACAAAATTGCCGCCAATTTTTTCCCCAAGCAAACTAGCTGTCTTCAAGTTATTCTGCTCTCCTTTCAAGTTGGAAGAGCCATTCATGAGATTTGAATATTTGACATGCATGAATTGCTCAAATTGTGAATTCATAACTGAAGTACCCGATATGTCTCAATGTCAAAGTTTAAGGAGATTGCTGTTTGAAGATTGTTACAATTTGATCAAAATTCATGATTCAGTGGGATCTCTCTCGAAGCTGGTTGAATTAAATGTTAGTGGATGCGTTAAACTTGCAAGCTTTCCCCATGAAATCAAGATGCCATCTCTTCAAGCGATTGATTTGAGTTTTTGCGAGAGTCTTGACTACTTCCCACATACAGTTGGAAACATGGATGCATTAACGTATGTTTGGATTGAAGAAACATCTATTAAGGAGCTCCCACCTTCCATTGGAAATCTTGCCCGGCTTGAATCTTTGAACTTAAGCTCTTGCAAAAGTCTTAGGGAGCTTCCAAACAGCTTATTCACGTTTCAAAATCTTGACTGGCTTGGTTTGGAAGGCATTCATCCTGATGGGAGAAAGTCTTTAAGGAAATTATTGCAAGAGAGCCAACCAGTTAGTAGCTGCACAAACGTACAGTTCTTGATGCTCCAAAATTGTTGTCTCTTGGATGAAGATGTTCAACTAACTCTGGATCTTTTCCGAAATTTGATAGAGTTAAATCTATCAGGGAATGATTTTGTGTCTCTTCCTGAGTGCCTTAAAGAGTGTGGTAAGTTGTTGAAATTGAATGTGAATAACTGCAAGTGGCTAAGAGATATACCAGGGTTACCATCAAATTTGCAGATAATGGGGGCAGAGAATTGCATTTCATTAACTCCAAAGTCATTGGGCCATTTATGGTCTCAGGCCAAAAGGGAGTTCTATGGCATGAGGACCATTTTCCCAGCAAAGTCATCTCCTGATTGGTTCCACAGTTGGTGTGGAGGAGGGAAAATGTCTTTTCTTGCTCGTAGGAATTTCCCTCATGTGGCATTTGCATTTGAGTTGGGGAAAGCCAACACGAGTAGGAGACAATCATTACGTTTTTCTCTGAGCATCAATGGTCGCATATTACAAGAGAGAAATGATCGTATCACAATTGCACCAGATCACGTGGCTTTATTTAATCTGGGAGTGGCTTTTGAGGGAGAAGACTGGAGGTGGCTTCAAAGATTCATGGAATTGGATTGGAATGATGTGGAGATACAAGCCATTTGTTTAACGCCAGAGATACCTGTGGTTAAGTGTGGAGTTTATGTGTACCAACGGCTAACAAACATGGAGAATATCCAATTCAAGCCTCCTTTGGTTTCCATAAATACTCCAGCAACTTCATTGAAACGAAAAGCCATAGCTTCTCCTCCAAATGCACCATCCAAGAAGGCCCTCAGAAAGCTCAAGACTACTGATAAAGGAAAGATCAACAACATAAAGAAAGGTTCAAGGAGAAATCAACGACACCAATTGTTTCATTCCCGCCGCAAGAAAAGGATGGTTTTTCCAATGGGTAAGCATGTTTGGAGATTTTTGAACTGTTAG	3348	0.3964	MAIQGAASSSLSFTKYRYDVFLSFRGEDTRKSFTVILYEALRKKGINAFIDDRKLGKGERIAPSLLKAVDKSRISIIVFSANYATSTWCLDELAHIIRCKKKKNQVVMPIFYKVDPMDVQYQRNSFEEAMAAHEAGFINDLQKVRKWRSALFEAASLSPAWLFEDGYEFGFIERIVGDVYARLPPKPHHNVEHMVGLEPRIDEVISLLNKSDNGVCMLGIHGTGGIGKTTLAKAVYNSIFYQFEGACFLFDVNEASKKFQGIVNLQQKLMSDILEEKILRFCSADEGISKIKHRLSHKRVLLVLDNVDEIEQLERLAGGCDWFGCGSKVIITTRNKQLLIAHNVKRTYELMQLNDHDSLELFCWHAFHMSLPPKGYQQMSSYVISYAKGLPLALKLIGANLADKNLEEWRSTLEQYDRIPERTIHEVLKISYDCLQDGAKTVFLDIACFIREEILGSLDEIVDSSDYGVRFYIEVLIDKSLIAVTDTGSLHMHDLIKQMGREIVRKEAQSNPGKRSRLWNYKDVLKVLHENSGTSNIEGIMFDPPQQQEVEWSGIAFEKMNNLRILIVRKAQFSTGPKYLPNSLRWLEWEGYPSTKLPPIFSPSKLAVFKLFCSPFKLEEPFMRFEYLTCMNCSNCEFITEVPDMSQCQSLRRLLFEDCYNLIKIHDSVGSLSKLVELNVSGCVKLASFPHEIKMPSLQAIDLSFCESLDYFPHTVGNMDALTYVWIEETSIKELPPSIGNLARLESLNLSSCKSLRELPNSLFTFQNLDWLGLEGIHPDGRKSLRKLLQESQPVSSCTNVQFLMLQNCCLLDEDVQLTLDLFRNLIELNLSGNDFVSLPECLKECGKLLKLNVNNCKWLRDIPGLPSNLQIMGAENCISLTPKSLGHLWSQAKREFYGMRTIFPAKSSPDWFHSWCGGGKMSFLARRNFPHVAFAFELGKANTSRRQSLRFSLSINGRILQERNDRITIAPDHVALFNLGVAFEGEDWRWLQRFMELDWNDVEIQAICLTPEIPVVKCGVYVYQRLTNMENIQFKPPLVSINTPATSLKRKAIASPPNAPSKKALRKLKTTDKGKINNIKKGSRRNQRHQLFHSRRKKRMVFPMGKHVWRFLNC	1115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1331g00011	1115	Gene3D	-	184	348	IPR027417	-
	Pral1331g00011	1115	Gene3D	-	12	183	IPR035897	-
	Pral1331g00011	1115	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	184	-	-
	Pral1331g00011	1115	SUPERFAMILY	"Winged helix" DNA-binding domain	423	528	IPR036390	-
	Pral1331g00011	1115	ProSiteProfiles	TIR domain profile.	16	183	IPR000157	GO:0007165
	Pral1331g00011	1115	Gene3D	-	352	436	IPR042197	-
	Pral1331g00011	1115	PRINTS	Disease resistance protein signature	294	308	-	-
	Pral1331g00011	1115	PRINTS	Disease resistance protein signature	387	401	-	-
	Pral1331g00011	1115	PRINTS	Disease resistance protein signature	740	756	-	-
	Pral1331g00011	1115	PRINTS	Disease resistance protein signature	217	232	-	-
	Pral1331g00011	1115	Pfam	TIR domain	18	179	IPR000157	GO:0007165
	Pral1331g00011	1115	Gene3D	Ribonuclease Inhibitor	719	895	IPR032675	-
	Pral1331g00011	1115	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	157	IPR035897	-
	Pral1331g00011	1115	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	446	IPR027417	-
	Pral1331g00011	1115	Gene3D	Ribonuclease Inhibitor	552	718	IPR032675	-
	Pral1331g00011	1115	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	802	IPR044974	GO:0006952
	Pral1331g00011	1115	Pfam	NB-ARC domain	200	418	IPR002182	GO:0043531
	Pral1331g00011	1115	SUPERFAMILY	L domain-like	541	887	-	-
	Pral1331g00011	1115	SMART	till_3	17	157	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1331g00011	Pral-Chr1331	109421	114969	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1331g00011	18	776	WRKY Transcription Factor Family	AT4G12020	29.987	8.33e-90	316

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1331g00011	-		-	pcin:129286217	1322.76