Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1326g00009 ATGTCCGCCATGGTTTCTGCCCTTGCTCAGGTCATCGGGGCTTCCCCTAATGCTTATCAGGATCCTTTAACTGAGTCGACTCAGCCCACTTCTGAGCCTAATAACACTCAACAATATCTTCAAGCACTTCAACATCATCAAGAGAGCACAAGGAAGAGACACTACAGAGGGGTAAGACAAAGGCCATGGGGGAAGTGGGCGGCTGAGATTCGTGATCCCAAGAAAGCCGCCAGAGTTTGGCTCGGAACCTTCGACACTGCAGAGGCCGCCGCCCTTGCTTACGACGAAGCCGCCCTCAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTCCCTGAGAGAGCTCAACTTCAGCCATCACCGTCCATGACGACGACGTCGTTTCCTTCATCCTCAGGTGAATTTTCTTTCCTCACAAATCCTCCTCCTCGTCAACCACCACATGTTAATGTTCCACTCGCCCTTGCTCCTCCCACCGCTGTACCCTTCTCTCCACAACAACCTTATTATCATAATTATTATCAATATCCTCAACATCTTCTGGCAAGTTCTGGTTCGAGTCACAATATGTTTTATAATTCTCCTCAACAACAACAACAACCTTATACGGCTCTGTCTTCCTCGTCTTCATCGTCCGGAATGTCCCACCAACAACAAGAACAAGAAGACCTTCTCACGTCTTCGATGCAATTTGGCGGTCCCAGCTCGTCCTCTAGTTCTCATCCTCCTTCCAATTGGCCATATCATGAATTTGATGGTCAACGTTGA 765 0.485 MSAMVSALAQVIGASPNAYQDPLTESTQPTSEPNNTQQYLQALQHHQESTRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERAQLQPSPSMTTTSFPSSSGEFSFLTNPPPRQPPHVNVPLALAPPTAVPFSPQQPYYHNYYQYPQHLLASSGSSHNMFYNSPQQQQQPYTALSSSSSSSGMSHQQQEQEDLLTSSMQFGGPSSSSSSHPPSNWPYHEFDGQR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1326g00009 254 MobiDBLite consensus disorder prediction 186 254 - -
Pral1326g00009 254 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Pral1326g00009 254 MobiDBLite consensus disorder prediction 186 244 - -
Pral1326g00009 254 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Pral1326g00009 254 MobiDBLite consensus disorder prediction 115 152 - -
Pral1326g00009 254 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 MobiDBLite consensus disorder prediction 115 138 - -
Pral1326g00009 254 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 PANTHER DNA-BINDING DOMAIN 31 222 IPR044808 GO:0003700|GO:0009873
Pral1326g00009 254 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Pral1326g00009 254 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1326g00009 Pral-Chr1326 58988 61961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1326g00009 1 116 AP2-EREBP Transcription Factor Family AT5G61890 63.866 8.46e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1326g00009 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1326g00009 - - pcin:129308292 280.796