Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1319g00005 ATGGAACAAGGTCAATTCTGGATGTGGACGAAGAGGAAGTACTCTTTGAGCTCTTGTAATCTCATCACTTCATCATCAACAAAACCCTCTTCTTCTTATGATGATTCGTCATGGGAAGAGCAAGCTTTCGCGGAGGATGCTTCTGGGCCTCTTGGTGGATGCATATGGCCACCCAGATCATACACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTAGGAGGCCACATGAATGTTCATAGAAGGGATAGAGCCAGACTGAAGCAACCCTCAAGCCCCCAAAACAATGAACTTCACACAATTCCAAATACTTCTTCTTCACTTATGGGTTTCTTATATCCGTATAATAATAATTGTTCTCCTACCAACAACCCTAATTCTGTTCTTGTTGCTTCACCTTCTAATAAGGCTTTAGTAGCTCCATCGTCAAACACTGAGGAAACCATAATGGTTCCAGCTTACAATTCTTCTTCTATTATTCCCCCCCACGGACATAAGGTGGCTTCTAATTATTCTCCTCTCTATTCTTCTTCTAAATCGAACCGCTCAAACTTCGCTGAAGCTGAAGCTGAGAAGATCACAGAGGTATTGGATTGCAGGTGCGAGGATAGTGGAAAATCTGATATGGCTTCTAGTTTAAATTTGGTCGTGTGTAGAGGTAGTGAGGCAAAGGAGGAAGCTATTAGTTGCAAGAAGAGGAGAACTTCCGAAACTTCATCGATTCTTCCTCTCTTCCCAAATTCAAATTCTTCAGTTGAATTTAACCCTAGCTCCAATGAAGAGCTAGATCTGGAGCTAAGGCTGGGTCAAAGCAAGCACAAGGGTTTCTGA 840 0.4274 MEQGQFWMWTKRKYSLSSCNLITSSSTKPSSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNELHTIPNTSSSLMGFLYPYNNNCSPTNNPNSVLVASPSNKALVAPSSNTEETIMVPAYNSSSIIPPHGHKVASNYSPLYSSSKSNRSNFAEAEAEKITEVLDCRCEDSGKSDMASSLNLVVCRGSEAKEEAISCKKRRTSETSSILPLFPNSNSSVEFNPSSNEELDLELRLGQSKHKGF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1319g00005 279 PANTHER OS07G0101800 PROTEIN 32 274 - -
Pral1319g00005 279 Pfam C2H2-type zinc finger 61 85 - -
Pral1319g00005 279 Gene3D Classic Zinc Finger 58 110 - -
Pral1319g00005 279 MobiDBLite consensus disorder prediction 84 105 - -
Pral1319g00005 279 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pral1319g00005 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Pral1319g00005 279 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Pral1319g00005 279 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1319g00005 Pral-Chr1319 64212 65566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1319g00005 29 279 C2H2 Transcription Factor Family AT2G37740 31.699 1.15e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1319g00005 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1319g00005 - - pcin:129289629 395.971