Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1313g00006 ATGGCCCTTGTTGCTGCTTCATCCTCTTCCTCTGCTCAATCCGTCGCCAAGAAGAATGACGTTTTCATTAGCTTTAGGGGTGAGGACACTCGCTCCAACTTCACCATCCATCTTTATGACGCTTTCTGTAGAAAACAAATTAGAACCTACATGGACTCCCAACTTGTGAAAGGAGATGAGATCTCACCATCACTTTTGCAAGCTATCGAGGATTCATATGTATCAGTGGTGGTGTTCTCTGAAAATTATGCTTCTTCAAGATGGTGCTTGGATGAACTCGTCCATATACTCCATTGCAAAAGAGTTCAAGGACAGATTGTTATTCCTGTCTTCTATAGAATCGACCCATCTCATGTACGCAAGCAGACCGACATTTACAAGCAAGCATTTGAGATATATGAGAGAGATCTCAAGGTTGACCAACACAAGATGCAAATATGGAAGCAAGCTCTCAATGAAACTGCAAACTTGGCAGGTTTTGACTCTCACACGTTCAGGGATGAATCCGAATTGCTTCACAAGATTGTCAAAGACATATTGCAGAAACTGAATCACAAGTACTCCCCAGCTGAACTAAAAGGACTCATAGGCATTGAGGACAACTGCGCCGAGATTGAATTATTGTTGAAAGATGCCAAAACAAAAACCATTGGAATATGGGGCATGGGGGGCATCGGCAAGTCAACCATTGCCAAAAATATATTTTTAAAATGTTCTTCCGACTATGATCGTTCTTGCTTCTTGGAAAATGTAAGAGAAGAGTCTAAAAATGGACTAACTGGATTACGCCATAAATTTCTCTCTCGTCTGCTAAGGGATGATCTCTTTATGGAAACTGCAAGCTATTTTCTTGAGTCGAGCCTTAGTCGTATGAAGGTTTTTGTTGTTCTTGATGATGTCAGTACGGCGGAGCAATTAGAATATTTGGTTGGAGAACCTTTTTACTTTGGGCTAGGAAGTAAAATTCTCATCACAACGAGGGACAAGCATGCGCTCAGCAAAGGAGTTGATGTAATATATAAGGTTAAGGAATTGAAGTCCCACCGATCCCTTGAACTTTTCAGCTTGAATGCCTTCAGCGCTAGCTTGCCTATAATGGGATATGAAGAACTAACAAAAAGGGCAGTTGTTTATGCACAAGGAATTCCGTTGGCTTTAAAAGTTCTGGGTTCATATCTTCGTGGAAGAAGTGAAGTTGAATGGAAGAGTGCTTTGAGAAAACTTGAGAAGAGTCCTCATAAAGATATCCAAAAGGTGTTAAGGTTGAGTTATGATGAACTGGATGATGAGGAGAAGAAAATATTTCTGGACATCGTGTGCTTTTTGAAGGGAGAATCGACAGAACTTGTAATCAGTTTATTAGATAGCTTTGACTTCTCTGGAGCAATCGGCATAAGAACACTCCATGACAAGGCTCTCATAGATGTGCATTATGATATTGTACTAATGCATGATTTGATGCAAGAAATGGGGTTGCAAATAGTTCGTGAAGAATCTAATGGTAAACCAGAAAGACGTAGCCGATTATGTGATTCTAAAGAAATTTACGATGTCTTAGCTAACAATAAGGGATCAAAAAAAATCGAAGGAATAAGGTTGGATGTTTCTCAGATTAAAGATCTACATTTGGAAGCTGACATTTTCAAGAAGATGCCTAATATGAGATTTCTCAAATTTTATTCTGGCAGTGGCTCAAGTCATGTGCACCTTCCAAAAGGTCTCAAATTTCTTCCTAATAAGATAAGGTATCTAGAGTGGTATGGATTCCTACCTAAAGCTCTGCCCTCCACTTTTTGTCCTGCACAACTTGTTAAGCTCTGCATGCGCAATAGCCATCTACAAAAGCTTTGGAGCGGAGTGCAGGATTTTGTGTGCTTACAAGAGATAGACCTCAGATATTCCAAACAGCTACAAGAGCTGCCGAATCTCTCCAAATGCTTGGACCTCAAAGTGGGTGCTCGAATCTCAAGGAGTTCTCAGTGTCATCGGATGAACTGA 1998 0.4044 MALVAASSSSSAQSVAKKNDVFISFRGEDTRSNFTIHLYDAFCRKQIRTYMDSQLVKGDEISPSLLQAIEDSYVSVVVFSENYASSRWCLDELVHILHCKRVQGQIVIPVFYRIDPSHVRKQTDIYKQAFEIYERDLKVDQHKMQIWKQALNETANLAGFDSHTFRDESELLHKIVKDILQKLNHKYSPAELKGLIGIEDNCAEIELLLKDAKTKTIGIWGMGGIGKSTIAKNIFLKCSSDYDRSCFLENVREESKNGLTGLRHKFLSRLLRDDLFMETASYFLESSLSRMKVFVVLDDVSTAEQLEYLVGEPFYFGLGSKILITTRDKHALSKGVDVIYKVKELKSHRSLELFSLNAFSASLPIMGYEELTKRAVVYAQGIPLALKVLGSYLRGRSEVEWKSALRKLEKSPHKDIQKVLRLSYDELDDEEKKIFLDIVCFLKGESTELVISLLDSFDFSGAIGIRTLHDKALIDVHYDIVLMHDLMQEMGLQIVREESNGKPERRSRLCDSKEIYDVLANNKGSKKIEGIRLDVSQIKDLHLEADIFKKMPNMRFLKFYSGSGSSHVHLPKGLKFLPNKIRYLEWYGFLPKALPSTFCPAQLVKLCMRNSHLQKLWSGVQDFVCLQEIDLRYSKQLQELPNLSKCLDLKVGARISRSSQCHRMN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1313g00006 665 PRINTS Disease resistance protein signature 216 231 - -
Pral1313g00006 665 PRINTS Disease resistance protein signature 287 301 - -
Pral1313g00006 665 PRINTS Disease resistance protein signature 621 637 - -
Pral1313g00006 665 PRINTS Disease resistance protein signature 379 393 - -
Pral1313g00006 665 SMART till_3 18 157 IPR000157 GO:0007165
Pral1313g00006 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 650 IPR044974 GO:0006952
Pral1313g00006 665 SUPERFAMILY L domain-like 532 650 - -
Pral1313g00006 665 Pfam Leucine Rich Repeat 603 621 IPR011713 -
Pral1313g00006 665 FunFam Disease resistance protein (TIR-NBS-LRR class) 346 428 - -
Pral1313g00006 665 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Pral1313g00006 665 Gene3D - 173 339 IPR027417 -
Pral1313g00006 665 Gene3D - 344 428 IPR042197 -
Pral1313g00006 665 Pfam TIR domain 20 189 IPR000157 GO:0007165
Pral1313g00006 665 Gene3D Ribonuclease Inhibitor 447 659 IPR032675 -
Pral1313g00006 665 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Pral1313g00006 665 Pfam NB-ARC domain 207 427 IPR002182 GO:0043531
Pral1313g00006 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 438 IPR027417 -
Pral1313g00006 665 SUPERFAMILY "Winged helix" DNA-binding domain 415 519 IPR036390 -
Pral1313g00006 665 Gene3D - 3 154 IPR035897 -
Pral1313g00006 665 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1313g00006 Pral-Chr1313 41548 44324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1313g00006 14 650 WRKY Transcription Factor Family AT4G12020 31.915 4.28e-83 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1313g00006 - - pcin:129306877 900.968