Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1313g00004 ATGGCCCTTGTTGCTGCTTCATCCTCTTCCTCTGCTCAATCCGTCGCCAAGAAGAATGACGTTTTCATTAGCTTTAGGGGTGAGGACACTCGCTCCAACTTCACCATCCATCTTTATGACGCTTTCTGTAGAAAACAAATTAGAACCTACATGGACTCCCAACTTGTGAAAGGAGATGAGATCTCACCATCACTTTTGCAAGCTATCGAGGATTCATATGTATCAGTGGTGGTGTTCTCTGAAAATTATGCTTCTTCAAGATGGTGCTTGGATGAACTCGTCCATATACTCCATTGCAAAAGAGTTCAAGGACAGATTGTTATTCCTGTCTTCTATAGAATCGACCCATCTCATGTACGCAAGCAGACCGACATTTACAAGCAAGCATTTGAGATATATGAGAGAGATCTCAAGGTTGACCAACACAAGATGCAAATATGGAAGCAAGCTCTCAATGAAACTGCAAACTTGGCAGGTTTTGACTCTCACACGTTCAGGGATGAATCCGAATTGCTTCACAAGATTGTCAAAGACATATTGCAGAAACTGAATCACAAGTACTCCCCAGCTGAACTAAAAGGACTCATAGGCATTGAGGACAACTGCGCCGAGATTGAATTATTGTTGAAAGATGCCAAAACAAAAACCATTGGAATATGGGGCATGGGGGGCATCGGCAAGTCAACCATTGCCAAAAATATATTTTTAAAATGTTCTTCCGACTATGATCGTTCTTGCTTCTTGGAAAATGTAAGAGAAGAGTCTAAAAATGGACTAACTGGATTACGCCATAAATTTCTCTCTCGTCTGCTAAGGGATGATCTCTTTATGGAAACTGCAAGCTATTTTCTTGAGTCGAGCCTTAGTCGTATGAAGGTTTTTGTTGTTCTTGATGATGTCAGTACGGCGGAGCAATTAGAATATTTGGTTGGAGAACCTTTTTACTTTGGGCTAGGAAGTAAAATTCTCATCACAACGAGGGACAAGCATGCGCTCAGCAAAGGAGTTGATGTAATATATAAGGTTAAGGAATTGAAGTCCCACCGATCCCTTGAACTTTTCAGCTTGAATGCCTTCAGCGCTAGCTTGCCTATAATGGGATATGAAGAACTAACAAAAAGGGCAGTTGTTTATGCACAAGGAATTCCGTTGGCTTTAAAAGTTCTGGGTTCATATCTTCGTGGAAGAAGTGAAGTTGAATGGAAGAGTGCTTTGAGAAAACTTGAGAAGAGTCCTCATAAAGATATCCAAAAGGTGTTAAGGTTGAGTTATGATGAACTGGATGATGAGGAGAAGAAAATATTTCTGGACATCGTGTGCTTTTTGAAGGGAGAATCGACAGAACTTGTAATCAGTTTATTAGATAGCTTTGACTTCTCTGGAGCAATCGGCATAAGAACACTCCATGACAAGGCTCTCATAGATGTGCATTATGATATTGTACTAATGCATGATTTGATGCAAGAAATGGGGTTGCAAATAGTTCGTGAAGAATCTAATGGTAAACCAGAAAGACGTAGCCGATTATGTGATTCTAAAGAAATTTACGATGTCTTAGCTAACAATAAGGGATCAAAAAAAATCGAAGGAATAAGGTTGGATGTTTCTCAGATTAAAGATCTACATTTGGAAGCTGACATTTTCAAGAAGATGCCTAATATGAGATTTCTCAAATTTTATTCTGGCAGTGGCTCAAGTCATGTGCACCTTCCAAAAGGTCTCAAATTTCTTCCTAATAAGATAAGGTATCTAGAGTGGTATGGATTCCTACCTAAAGCTCTGCCCTCCACTTTTTGTCCTGCACAACTTGTTAAGCTCTGCATGCGCAATAGCCATCTACAAAAGCTTTGGAGCGGAGTGCAGGATTTTGTGTGCTTACAAGAGATAGACCTCAGATATTCCAAACAGCTACAAGAGCTGCCGAATCTCTCCAAATGCTTGGACCTCAAAGTGGTATGTCTTCAGGGATGCAAAAGTTTGTGCTCTGTTCATCCCTCAATCTTGTCTCTGCACTCGCTTGCTGTTTTGAACTTATATAACTGCAAGAAACTTGAGAGTCTAAAAAGTGAGTTGCATTTAAAATCTCTGAACCATATCAATGTGATAGGGTGCTCGAATCTCAAGGAGTTCTCAGTGTCATCGGATGAACTGAGAGAATTGTATTTAGAATCAACAGGAATTGAAATGTTGCACTCGTCTGTAGCGCGTTCAAGTAAATTGAAACAGATTTGTCTTGGTGGCTCGAGACTCGTGAACCTTCCCAACCAATTATCTTGCTTGACTAGTTTGACGTTTCTTAGGCTCTCCGACTGTGAAGTCATTGATGATTTGAAGCTACATATCTTTTTCGATCGCATGTTGTCTTTAAGAGAAGTGTTGTTGGATAGGTGCGGTAACATAATTGACCTCCCCAGTAATACTAAGCATCTTTTAGGATTGGAATTGCTTACCCTACGGGATTGTAGGAGGCTTCGTTCTTTACCAGAACTCCCACCATCCATTACAAACCTGCAATGCGATGATTGCAAGTCGTTGGCAATTGTGTCAGCCTGTAGACCAACAAGCGGTGGCCCATTATGCTTCTCATTCCAGAACTGTGTGCAACTGAATGAACAATCGCTTCACAATATCATGGAGGCTGCTGCCTACTCTCTGACTTATTATTTATTGCATAAACATAAGAATCCCAGGCCTCATTGTTCGATTTGTGTTGCTGAAAGCAGAGTACCAGAGTGGATCAAATACAGGGCAGCACAAAGCTCCGTGATTGTTGAACTCCCGCGAATTTCAGACTTGGAGGATTTCTTCTTCTGCGTTGTACTTGGTGGTCGCCCAGAAAGTAATTTTGACATTTCTTTGAAATGCACATGCTACTTGGAAGGTTTTGATGCGGCACATTCAGCACTTCGAGTGGCTTTTACAGATATGAAATTTGACCATCTTTTTATATGGAATGAAAACTTAGCAGATAAAGGGGTAATGGATGAAATTAGAAGAAGAAATCAACAGTTGTTCACTACCATAAAGCTTCGCTTTGAATTCTCTGCTGTAATTTATGGGTTTGGAAAGTCAATGATCTCTGGCAAAAGCAAGTTAATGATCAAAGAATGCGGGGTGAGGCCAGTATCTGTCTCAGAATGTCAGAAATTTGTTGAGCAAATGGAAATGGGGAGGAAAAGGCAGAGGCCTCACGATGTTGAAGAGCAACAACCACCGCCTCACTTAAAAAAAATGGAGTTTGACAAGGGTGCACGTGCCAGCACTTAA 3267 0.408 MALVAASSSSSAQSVAKKNDVFISFRGEDTRSNFTIHLYDAFCRKQIRTYMDSQLVKGDEISPSLLQAIEDSYVSVVVFSENYASSRWCLDELVHILHCKRVQGQIVIPVFYRIDPSHVRKQTDIYKQAFEIYERDLKVDQHKMQIWKQALNETANLAGFDSHTFRDESELLHKIVKDILQKLNHKYSPAELKGLIGIEDNCAEIELLLKDAKTKTIGIWGMGGIGKSTIAKNIFLKCSSDYDRSCFLENVREESKNGLTGLRHKFLSRLLRDDLFMETASYFLESSLSRMKVFVVLDDVSTAEQLEYLVGEPFYFGLGSKILITTRDKHALSKGVDVIYKVKELKSHRSLELFSLNAFSASLPIMGYEELTKRAVVYAQGIPLALKVLGSYLRGRSEVEWKSALRKLEKSPHKDIQKVLRLSYDELDDEEKKIFLDIVCFLKGESTELVISLLDSFDFSGAIGIRTLHDKALIDVHYDIVLMHDLMQEMGLQIVREESNGKPERRSRLCDSKEIYDVLANNKGSKKIEGIRLDVSQIKDLHLEADIFKKMPNMRFLKFYSGSGSSHVHLPKGLKFLPNKIRYLEWYGFLPKALPSTFCPAQLVKLCMRNSHLQKLWSGVQDFVCLQEIDLRYSKQLQELPNLSKCLDLKVVCLQGCKSLCSVHPSILSLHSLAVLNLYNCKKLESLKSELHLKSLNHINVIGCSNLKEFSVSSDELRELYLESTGIEMLHSSVARSSKLKQICLGGSRLVNLPNQLSCLTSLTFLRLSDCEVIDDLKLHIFFDRMLSLREVLLDRCGNIIDLPSNTKHLLGLELLTLRDCRRLRSLPELPPSITNLQCDDCKSLAIVSACRPTSGGPLCFSFQNCVQLNEQSLHNIMEAAAYSLTYYLLHKHKNPRPHCSICVAESRVPEWIKYRAAQSSVIVELPRISDLEDFFFCVVLGGRPESNFDISLKCTCYLEGFDAAHSALRVAFTDMKFDHLFIWNENLADKGVMDEIRRRNQQLFTTIKLRFEFSAVIYGFGKSMISGKSKLMIKECGVRPVSVSECQKFVEQMEMGRKRQRPHDVEEQQPPPHLKKMEFDKGARAST 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1313g00004 1088 SMART till_3 18 157 IPR000157 GO:0007165
Pral1313g00004 1088 SUPERFAMILY L domain-like 483 878 - -
Pral1313g00004 1088 Pfam Leucine Rich Repeat 603 621 IPR011713 -
Pral1313g00004 1088 Pfam NB-ARC domain 207 427 IPR002182 GO:0043531
Pral1313g00004 1088 Pfam TIR domain 20 189 IPR000157 GO:0007165
Pral1313g00004 1088 MobiDBLite consensus disorder prediction 1055 1088 - -
Pral1313g00004 1088 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Pral1313g00004 1088 Gene3D Ribonuclease Inhibitor 508 691 IPR032675 -
Pral1313g00004 1088 Gene3D - 344 428 IPR042197 -
Pral1313g00004 1088 Gene3D Ribonuclease Inhibitor 692 847 IPR032675 -
Pral1313g00004 1088 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Pral1313g00004 1088 Gene3D - 180 339 IPR027417 -
Pral1313g00004 1088 FunFam Disease resistance protein (TIR-NBS-LRR class) 346 428 - -
Pral1313g00004 1088 PRINTS Disease resistance protein signature 216 231 - -
Pral1313g00004 1088 PRINTS Disease resistance protein signature 287 301 - -
Pral1313g00004 1088 PRINTS Disease resistance protein signature 379 393 - -
Pral1313g00004 1088 PRINTS Disease resistance protein signature 668 684 - -
Pral1313g00004 1088 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 711 IPR044974 GO:0006952
Pral1313g00004 1088 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Pral1313g00004 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 438 IPR027417 -
Pral1313g00004 1088 Gene3D - 16 179 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1313g00004 Pral-Chr1313 41548 47293 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1313g00004 14 823 WRKY Transcription Factor Family AT4G12020 33.533 1.20e-102 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1313g00004 - - pcin:129288061 1191.41