Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1313g00002 ATGGCCCTTCTTGCTGCTTCATCCTCTTTCTCTGCTCAATCCGTCCCCAAGAAGAATGATGTTTTCATCAGCTTTAGGGGTGAGGACACTCGCTCCAACTTCACCAGCCATCTTTATGATGCTTTCTGCAGAAAACAAATCAGAACCTACATAGACTACCAACTCGTGAAAGGAGATGAGATCTCACCATCACTTCTGCAAGCTATCGAGGATTCATATGTATCAGTGGTGGTGTTATCTGAAAATTATGCTTCTTCGAGATGGTGCTTGGATGAACTCGTCCATATACTCCATTGCAAAAGAGTTCAAGGACAGATTGTTATTCCTGTCTTCTATGGAGTCGACCCATCTCATGTACGCAAGCAGACTGGCCTTTACAAGCAAGCATTTGAGAGATATGAGGGAGATCTCAAGGTTGACCAACACGAGAGGCAAATGTGGAAGGAAGCTCTTAAGGAAACTGCAAACTTAGCTGGTTATGACTCCCGCAAATTTAGGGATGAAGCCGAATTGATTCAAAAGATTGTGAAAGACATACTGCAGAAACTGGAACAGAAGTACCCCCCAGCTGAAATAAAAGGACTCATAGGCATTGAGGACAACTGCATAGAGATTGAATTATTGTTGAAAGATGCCAAAACAAAAACCATTGGAATATGGGGCATGGGGGGTATCGGCAAGTCAACCATTGCCAAAACCATATTTTTAAAATATTCTTCCCATTATGATTGTTCTTGCTTCTTGGAAAATGTAAGAGAAGAGTCTAAAAATGGACTTAGTGAATTACGCCGTAAATTTCTCTCTCGTTTGCTAAGGGATGATTTCTTTAGTGATACTTCAACCTCTTTTCTTGAGTCGAGGCTTAGTCGTATGGAGGCTTTTGTTGTTCTTGATGATATCAGTACGGTGGAGCAATTAGAATCTTTGGTTGGAGAACCTTTTTGCTTTGGGCCAAAAAGTAAAGTTCTCATCACAACAAGGGACAAGCATGTGCTTAGCAAAGGAGTTGATGTAATATATAAGGTTAAGAAATTGAAGTTCCATCAATCCCTTGAACTTTTCAGCTTGAATGCCTTCAGCACTAGCTTGCCTATAGTGGGATATGAAAAACTAACAAAAACGGCGGTTGTTTATGCAAAAGGAATTCCATTGGCTTCAAAAATTTTGGGTTCATATCTTTGTGGCAGAAGTAAAGATGAATGGGAGAGTGCCTTAAGAAGTCTTGAGAAGAGTCCACATGAAGATATTCAAAAAGTGTTGAGATTGAGTTATGACGGATTGAATCATGAAGAGAAGAAAATATTTCTAGACATTGCTTGCTTTTTTAAGGGAGAGTTGATCAAATCTGTAATCAGTTTATTGGATAGCTTTGGCTTCAGTGGAGATATTGGTATAGGAAGACTTCATGACAAGGCTCTCATAGACGTGGACCATGGTACACATGTAGAAATGCATGATTTAATACAAGAAATGGGTTTACAAATAGTTCGTGAAGAGTCTATTGACGAACCTGGAAGACGTAGTAGATTATACAATTCTAAAGAAATTTATGATGTTTTAGCTACTAACATGGGATCAAAGAAACTTGAAGGCATAAAGTTGGATGTTTCTCAAATTAATGATGTACATTTAGAAGCTGACATTTTCAAGAAGATGCCTAATATAAGATTTCTCAAATTTTATTCTGCTTTCGGCATTGGCTCAAGCCATGTGCACCTTCCAGAAGGTCTCAGTTTTCTTCCCAATAAGATGAGGTATCTAGAGTGGCATGGATTCCCTCTTAAATCTCTGAGGTCCACATTTTGTCCTGAAAAACTTGTTAAGCTCTACCTACCCGGTAGCCATTTACAAAAGCTTTGGAAAGGAATGCAGGATTTGGTGAGCTTACAAGAGATAGACCTTAGTTATTCCAGACAACTACAAAAGCTGCCAAATCTCTCCAAATGCTTGAATCTCAAAGTGGTACGTCTTCAGGAATGCGAAAGTTTGTGCTCTGTTCATTCCTCAATCTTGTCTCTCGACTCGCTTGTTGAGTTGAACTTAGGTTGGTGCGTGAAACTTAGGAGTCTAAAAAGTAAGTCACATTCACGTTCTCTACGACATATCGCTGTGGTAGGGTGCTCGAGTCTCAAGGAGTTCTCAGTGTCATCGGATGAACTGAGAAGATTGGATTTAGTTGAGACAGGAATTGAAATCTTGCACTCGTCTGTAGCGCGTTCAAGTAAATTGGAAAGGCTCAGTCTTAGTTGCTCAACACTTGTGAAACTTCCCGACCAATTATCTTGCTTGACAAGTTTGACGGTTCTTAATCTTCGATACTGTGAAATGATTGATGATTCGAAGCTACGTATCCTTTTTGATGGCATGTTGTCTTTAAGAGAAGTGATGCTGGATGGGTGCGGTAAAATAATTGAACTCCCCAGTAACACTAAGCATCTTTTAGGATTGGAATATCTTAGCGTCAGGGATTGTAGGGGGCTTCGTTCTTTACCAGAACTCCCACCATCCATTGCAAGACTAGAAGCCGATTATTGCAAGTCGTTGGAAATTGTGTCAACTTGTAGGCCATCAAGTGGTAACCCATTAAGCTTCTCATTCAAGAATTGTGCGCAACTGAATGAACAATCGCTTCACAATATCATGGATGCCGCTGCCTATTCTATACGTTATTTTTTATTGCACAAAGATGAGGATGACATAGATCCTTATTGGATTGAAGATGAGGACATAGGTCCTCGTGGGATTTGTGTTCCCGGAAGCAGAGTACCAGAGTGGATCAAATACAGGGCAGCGCAAAGCTACATAATTGTTGAACTCCCTCCACTTTCAGACTCAATGCATTTCTGCTTCTGCGTTGTAGTTGATATTGACTCAGAAAGTGACTGGTTATATCACAAGTTGGAATGCTCATGCTACTTGGAAGGTTTTAATTCGACGCATTCAGTATACGGACTGCTTGATAGAGATTTGGAATCTGGTCATGTTTTTATATGGGATGATCCCTTCATATCTAGAGAGATGATGGATGAAATTAGAAGAAGAAGAAATCAACAGTTGTTCGCTAACATGCAGCTTTTCTTTGTATTCTCTACACTAACTCCTGATCATATTGTCCATAGCGAAACGATCAAAGAATGCGGGGTGTGGCCAGCATCTGTCTCAGAATGTCGGAAATTTGTTGAGCAAATGGAAATTGAGAGGAAAAGGAAGAGGCCTCGGGATGTTGAAGAGCAACAACCAACACTTCGGTTTAAAAAAAAAGGAGTTTGA 3270 0.4015 MALLAASSSFSAQSVPKKNDVFISFRGEDTRSNFTSHLYDAFCRKQIRTYIDYQLVKGDEISPSLLQAIEDSYVSVVVLSENYASSRWCLDELVHILHCKRVQGQIVIPVFYGVDPSHVRKQTGLYKQAFERYEGDLKVDQHERQMWKEALKETANLAGYDSRKFRDEAELIQKIVKDILQKLEQKYPPAEIKGLIGIEDNCIEIELLLKDAKTKTIGIWGMGGIGKSTIAKTIFLKYSSHYDCSCFLENVREESKNGLSELRRKFLSRLLRDDFFSDTSTSFLESRLSRMEAFVVLDDISTVEQLESLVGEPFCFGPKSKVLITTRDKHVLSKGVDVIYKVKKLKFHQSLELFSLNAFSTSLPIVGYEKLTKTAVVYAKGIPLASKILGSYLCGRSKDEWESALRSLEKSPHEDIQKVLRLSYDGLNHEEKKIFLDIACFFKGELIKSVISLLDSFGFSGDIGIGRLHDKALIDVDHGTHVEMHDLIQEMGLQIVREESIDEPGRRSRLYNSKEIYDVLATNMGSKKLEGIKLDVSQINDVHLEADIFKKMPNIRFLKFYSAFGIGSSHVHLPEGLSFLPNKMRYLEWHGFPLKSLRSTFCPEKLVKLYLPGSHLQKLWKGMQDLVSLQEIDLSYSRQLQKLPNLSKCLNLKVVRLQECESLCSVHSSILSLDSLVELNLGWCVKLRSLKSKSHSRSLRHIAVVGCSSLKEFSVSSDELRRLDLVETGIEILHSSVARSSKLERLSLSCSTLVKLPDQLSCLTSLTVLNLRYCEMIDDSKLRILFDGMLSLREVMLDGCGKIIELPSNTKHLLGLEYLSVRDCRGLRSLPELPPSIARLEADYCKSLEIVSTCRPSSGNPLSFSFKNCAQLNEQSLHNIMDAAAYSIRYFLLHKDEDDIDPYWIEDEDIGPRGICVPGSRVPEWIKYRAAQSYIIVELPPLSDSMHFCFCVVVDIDSESDWLYHKLECSCYLEGFNSTHSVYGLLDRDLESGHVFIWDDPFISREMMDEIRRRRNQQLFANMQLFFVFSTLTPDHIVHSETIKECGVWPASVSECRKFVEQMEIERKRKRPRDVEEQQPTLRFKKKGV 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1313g00002 1089 Gene3D - 181 339 IPR027417 -
Pral1313g00002 1089 MobiDBLite consensus disorder prediction 1069 1089 - -
Pral1313g00002 1089 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Pral1313g00002 1089 Pfam C-JID domain 917 1048 IPR045344 -
Pral1313g00002 1089 SUPERFAMILY L domain-like 484 879 - -
Pral1313g00002 1089 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Pral1313g00002 1089 Pfam TIR domain 20 189 IPR000157 GO:0007165
Pral1313g00002 1089 Gene3D Ribonuclease Inhibitor 694 851 IPR032675 -
Pral1313g00002 1089 Pfam Leucine Rich Repeat 605 622 IPR011713 -
Pral1313g00002 1089 Pfam NB-ARC domain 208 425 IPR002182 GO:0043531
Pral1313g00002 1089 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 160 IPR035897 -
Pral1313g00002 1089 Gene3D Ribonuclease Inhibitor 508 690 IPR032675 -
Pral1313g00002 1089 SMART till_3 18 157 IPR000157 GO:0007165
Pral1313g00002 1089 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 714 IPR044974 GO:0006952
Pral1313g00002 1089 Gene3D - 345 428 IPR042197 -
Pral1313g00002 1089 PRINTS Disease resistance protein signature 216 231 - -
Pral1313g00002 1089 PRINTS Disease resistance protein signature 624 640 - -
Pral1313g00002 1089 PRINTS Disease resistance protein signature 379 393 - -
Pral1313g00002 1089 PRINTS Disease resistance protein signature 287 301 - -
Pral1313g00002 1089 Gene3D - 16 180 IPR035897 -
Pral1313g00002 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1313g00002 Pral-Chr1313 19555 23292 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1313g00002 14 825 WRKY Transcription Factor Family AT4G12020 34.053 1.76e-104 359