Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1308g00004 ATGGCGCAAGGAGCGGGATCTTCTTCTGTCACCCACAGATGGAGTTATGATGTATTTGTTAGCTTTCGAGGGGAAGATATTCGCTTGAATTTTTTGGGTCATCTCTGCGAGTCTTTTCGTCAAAGAGAGATTCGTACCTTCACTGATGATGAATACCTCGTTGCAGGCGAAGAAATCCGATCGTCTCTTTTCAGAGCCATCAAGGAATCCAGGATAGCCATCATAATTTTCTCCAAAAACTATGCAACCTCAACCTTCTGTCTGGATGAACTTGTCCAGATTGTTGAGTGCTTCAAAGAAGAAAGTCGGCTGGTGTATCCAGTGTTTTATCATGTGAATCCCTCAGATGTGCGACATCAGACAGGGAGTTACGGACAAGCTTTGGCTAATCTGCAGAACAAACCGGGAATAAAGGATGAGAGGTTGCAGAAGTGGAGGTGGGCTTTGTCTCAGGTAGCTGACTTTTCAGGCTGGCATTTCCAACCAGGGATTACAAAAGAACAAGAGCATATTAAAACGATTACTCATGAAGTCTCTGCCAAGATCAATCTCAGTCTTTTAGAAGTTACAGAATATCCAGTTGGCCTTGAGTTTCGAGGGAAAGAAGTAATTTCACTTCTGGATCTTGGATCTAACAAAAACCCACTGATGATTGGAATTTGTGGCATTGGTGGGATAGGCAAATCAACAATTGCAAGAGCTGTGTATAACTCAGTTGCTGATAATTTTGATGGTTTGTGTTTTCTTTCTAATGTTAGAGAAATTTCTTACAAGCATGGCTTGTCACATCTTCAAGAGACATTACTTTGTGAATTGGTGGGAGAGAAGGAACTCAAATTGGGTAATTTCTATAAAGGAATTTCAATAATAAAGAATAGGCTCCAAAACAAGAAGATTCTTTTAATCCTTGATGATGTTGACAAAGTGGAGCAATTACGAGCATTAGCTGGAAGCTGTGAATGGTTTGGCCTGGGAAGTAGAATCATTATCACGACAAGGGATAAACAGTTGCTAGCAAGTCAGGGAATCCAAAGAATTTATGATGTCAAGGGGTTAAGTGCTGATGAATCTCTTCAGTTAATTAAAAGGCATGGCTTTAAAGGGCTTACGGGGGATTTAGATCATTACAAGGATGTTCTGAATCGTGCCATAAAATATTCATGTGGCCTTCCATTAGCCTTGGAAGTGATTGGCTCTAATTTATGTGGTAAAGAAGTTGATGTATGGAGTTCTGCATTAAATGATTATGAAGCTATACTTGATAAAGATGTTTTTGAGGTCCTTAAATTAAGCTATAATGCTTTAAGCAGAGAAGAACATAAGGAAATTTTTCTTGACTTGGCCTGTTTTTTTAATGGTGAGAAGTTGGGAGACATCATAAATATGATGATGAGATTTCGTGGTGTTGAACCAACACATGCCATTAATGTGTTGATGGATAAATCTCTAATCAAGATTAAAAAAGATCGTGTGATAATGCATGACTTGATTGAAGATATGGGTAAAGAAATTGTTCGGCAACAATCACGAAATGAGCCTGGGAAACACAACAGGTTGTGGTGTTATGAAGACATTATTGATGTCTTGCAAAATAACACGGGCACTGATGAAATTGAAGTCATAATTCTTGATTTACCCAAAGATAAAGAAATCCAATGGAATGGCAGGGCATTCGAGAAGATGGAGAAGCTCAAAGTGCTTGTCATAAAGAATGCAAGCTTTTCTGAAGGCATCAAATATCTCCCAAATAGTCTGTGTGTGTTGGAATGGAAGGGGTACCCTTTTGAGTTTTTGCCATCTAATTTTCATCCAACAAAACTTGTCCATCTTGATTTGTCCAATAGTTGTGTAGTGCCTCAACTTTTTGATAAGAAATTACAGAGTTTAAGTCGCGTGAATATTAGCAACTGTAAAGTCTTGACCGAAATACAAGACTTGTCAGAAGTCCCTAATTTAACAGAATTGTGGCTTGATGGTTGTATAAACTTAACTAAAATCCATGATTCCCTTGGATTCTTGGGTAAACTCAAAAGATTGAGTGCTATGCGATGCAAAAACTTGAAGACTTTACCCCCTCGTATTAAGCTAACATCCCTTGAACATCTAAATCTCTTTGGCTGCTCGAGCCTTAAAAGTTTTCCTGAGATATCAGACAAGATGGAGAAGTTGAAGACACTTGATTTGGAGAGTACGGCCATTGAGAGTTTGCCATCTTCAATTTGCAACCTCGTTGGACTTGAAAGCTTAAACATGGAAGCGTGTCCTAATCTTAAGCAATTACCAGCTAGTATTTGTATGTTGCCAAACCTATTGGACCTAACAACAAATTTTTGTGAAGAGATAAAGGATTTCGAGAAATGCAATGGTGGAAATAAAGCAAGCTCAGACTGCTCAATCATTTTGACCAAAGGAAAAGAAAAAGAAGACAACTCAACCGTGTCTTTGAGAAAACATTTCGGTTTCTCAAATTGCAACTTAACAAACGACTCTCTTGCTCTCTGTCTCTCTTGTGTTCCTGACATTGTACATTTAGATCTAAGGTTTAATAGCTTCACAACTCTTCCAGCATGCATAGAAGAATGTGAGAATTTAAGATATCTCTTGCTGGATCATTGCACGCAATTGCAGAAAATTATTAGGATGCCACCAAAATTGGAAACATTCAGCGCCATAGGTTGCACGTCTTTGTCTCAGTCATCCAGAAAAAGAGTATTGGATCAGGCATTCTACTTTGGAAACGGGAAAAGAAACTTTGTTTTGCCAGGAAAAAGAATCCCTCAATGGCTTGACTATTATAGTCGAGGAAGCTCCGTGTCTTTTTGGATTCGTCATAAGTTCCCAAAAGTTGCTCTTTGGTTTCTTGTTGAAAATGACCAAGTTTATCCTTATAGATGTATATTCTCAGTGCACATTAATGACACCAAGTTAGATATTTCTTCAGAGTGGCTTTTACTGTCAACTATACTGGGTAATCATATATACATATGTGACATGGAAAGCATAATTAAGAAGGTTCAACTTCGTCATGCAGATAGATGGAATCAAGTAAAGGTTTCAATTAAGAGCCATACACAAGAAGTAATAATGGACAAGGAAATTTTTATGGCAGTTCATGCATACAGGCAACAAAATGACTTTGCAGATATTCGATTCAGGGACCCGAGAATATACCTTGATTGCAACTCATGGCAAAAAGCACAACAATCGCCTCGAGATTGGGAAGAACTTGAAGATGAAATGAATGAGGATCCAAATTCAACAAAAGTCGCAGAGTCAGTCCAAAAAATCACGCGTTATCAAGAAGCAGAACCCATGGCTACTGAGCTTGTGGGTGGAGCATTTGATTGGCTGGCGCAAGGAGTGGGATCTCCTTCTGTCACCCACAGATGGAGTTATGATGTGTTTCTTTGCTCTAGAGAGGAAGATACTCGCAGGATTCGTACCTTCATTGATGATGAATCCCTCTATGCAGGCAAAGAAATCCGACCGTCTCTTTTCGAAGCCATCAAGGCATCCAGGATAGCCATCATAGTTTTCTCCAAAAACTATACAACCTCAGCCTTCTGTCTGGATGAACTTGTCCAGATAATTGAGTGTTTCAAAGAAGAAAGTTGGTTGGTGTGTCCAGTATTTTATCATGTGGATCCCTCAGATGCGCGACATCAGACATGGAGTTACGGACAAGCTTTGGCTAATCTGCAGAACAGACCGGGAATAAAGGTTGAGAGGTTACAGAAGTGGAGGTGGCCTTTGACTCAGGCAGCTGACTTGTCAGGCTGGCATTTTCAGCTTGGGATTACTAAAGAACAAGAGCATATTAAAACGATTACTCGTGAAGTCTCTGCCAAGACAATTAATCCCACTCTTTTAGGAGTTGCTGATTATTCAGTTACCCTTGAGTTTCCGGGGAAAGACATAACATATAATCCTGCTGCTGACTCTACTCTTCGTCGAGCAGATGTGAACACTGAAGAGGAGCCAATGAAAATTGAAGATGGAACCCAGGAGCCTTCTGTTAGTAAGAAGAAAGAAAAGAAAGAGAAGAAGAAAGGGAAGGAGAAGAATGAATAG 4071 0.3947 MAQGAGSSSVTHRWSYDVFVSFRGEDIRLNFLGHLCESFRQREIRTFTDDEYLVAGEEIRSSLFRAIKESRIAIIIFSKNYATSTFCLDELVQIVECFKEESRLVYPVFYHVNPSDVRHQTGSYGQALANLQNKPGIKDERLQKWRWALSQVADFSGWHFQPGITKEQEHIKTITHEVSAKINLSLLEVTEYPVGLEFRGKEVISLLDLGSNKNPLMIGICGIGGIGKSTIARAVYNSVADNFDGLCFLSNVREISYKHGLSHLQETLLCELVGEKELKLGNFYKGISIIKNRLQNKKILLILDDVDKVEQLRALAGSCEWFGLGSRIIITTRDKQLLASQGIQRIYDVKGLSADESLQLIKRHGFKGLTGDLDHYKDVLNRAIKYSCGLPLALEVIGSNLCGKEVDVWSSALNDYEAILDKDVFEVLKLSYNALSREEHKEIFLDLACFFNGEKLGDIINMMMRFRGVEPTHAINVLMDKSLIKIKKDRVIMHDLIEDMGKEIVRQQSRNEPGKHNRLWCYEDIIDVLQNNTGTDEIEVIILDLPKDKEIQWNGRAFEKMEKLKVLVIKNASFSEGIKYLPNSLCVLEWKGYPFEFLPSNFHPTKLVHLDLSNSCVVPQLFDKKLQSLSRVNISNCKVLTEIQDLSEVPNLTELWLDGCINLTKIHDSLGFLGKLKRLSAMRCKNLKTLPPRIKLTSLEHLNLFGCSSLKSFPEISDKMEKLKTLDLESTAIESLPSSICNLVGLESLNMEACPNLKQLPASICMLPNLLDLTTNFCEEIKDFEKCNGGNKASSDCSIILTKGKEKEDNSTVSLRKHFGFSNCNLTNDSLALCLSCVPDIVHLDLRFNSFTTLPACIEECENLRYLLLDHCTQLQKIIRMPPKLETFSAIGCTSLSQSSRKRVLDQAFYFGNGKRNFVLPGKRIPQWLDYYSRGSSVSFWIRHKFPKVALWFLVENDQVYPYRCIFSVHINDTKLDISSEWLLLSTILGNHIYICDMESIIKKVQLRHADRWNQVKVSIKSHTQEVIMDKEIFMAVHAYRQQNDFADIRFRDPRIYLDCNSWQKAQQSPRDWEELEDEMNEDPNSTKVAESVQKITRYQEAEPMATELVGGAFDWLAQGVGSPSVTHRWSYDVFLCSREEDTRRIRTFIDDESLYAGKEIRPSLFEAIKASRIAIIVFSKNYTTSAFCLDELVQIIECFKEESWLVCPVFYHVDPSDARHQTWSYGQALANLQNRPGIKVERLQKWRWPLTQAADLSGWHFQLGITKEQEHIKTITREVSAKTINPTLLGVADYSVTLEFPGKDITYNPAADSTLRRADVNTEEEPMKIEDGTQEPSVSKKKEKKEKKKGKEKNE 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1308g00004 1356 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pral1308g00004 1356 Pfam NB-ARC domain 203 417 IPR002182 GO:0043531
Pral1308g00004 1356 Pfam TIR domain 1140 1284 IPR000157 GO:0007165
Pral1308g00004 1356 Pfam TIR domain 16 182 IPR000157 GO:0007165
Pral1308g00004 1356 Gene3D Ribonuclease Inhibitor 480 713 IPR032675 -
Pral1308g00004 1356 Gene3D Ribonuclease Inhibitor 714 904 IPR032675 -
Pral1308g00004 1356 SMART till_3 15 155 IPR000157 GO:0007165
Pral1308g00004 1356 SMART till_3 1131 1257 IPR000157 GO:0007165
Pral1308g00004 1356 Gene3D - 351 436 IPR042197 -
Pral1308g00004 1356 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Pral1308g00004 1356 SUPERFAMILY L domain-like 540 895 - -
Pral1308g00004 1356 ProSiteProfiles TIR domain profile. 1116 1284 IPR000157 GO:0007165
Pral1308g00004 1356 PRINTS Disease resistance protein signature 217 232 - -
Pral1308g00004 1356 PRINTS Disease resistance protein signature 293 307 - -
Pral1308g00004 1356 PRINTS Disease resistance protein signature 694 710 - -
Pral1308g00004 1356 PRINTS Disease resistance protein signature 387 401 - -
Pral1308g00004 1356 MobiDBLite consensus disorder prediction 1318 1356 - -
Pral1308g00004 1356 MobiDBLite consensus disorder prediction 1315 1356 - -
Pral1308g00004 1356 Gene3D - 9 185 IPR035897 -
Pral1308g00004 1356 Gene3D - 1125 1289 IPR035897 -
Pral1308g00004 1356 Gene3D - 186 344 IPR027417 -
Pral1308g00004 1356 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 789 IPR044974 GO:0006952
Pral1308g00004 1356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Pral1308g00004 1356 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Pral1308g00004 1356 SUPERFAMILY Toll/Interleukin receptor TIR domain 1123 1260 IPR035897 -
Pral1308g00004 1356 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1308g00004 Pral-Chr1308 68374 75198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1308g00004 16 784 WRKY Transcription Factor Family AT4G12020 32.278 1.49e-85 306