Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1303g00004 ATGGCAGCATCAGCTGAAGAAAATAATAGGAACATGAAGGGAAGAAAGAAATCATCATCCAGAGGCCACCACCGGTTCGTCGGAGTTCGTCAAAGGCCGTCCGGACGGTGGGTGGCTGAAATCAAAGACTCCTTTCAGAAGGTCCGTCTTTGGCTTGGAACATTCGACACAGCCGAGGACGCAGCTCGCGCCTACGACACAGCCGCGCGTGCTTTGCGCGGCGCCAACGCTCGCACCAACTTCGACTTGCCGGATCCTTCTGCCCCTGGCGGCGGCAGCGGCGCCACCCAACACGGTGGCAGTTTCAGCTACAAGCCGGAGAATCTCGAGCCCTTCTCGTTCGAGGACACCGGAGGTGATCATGACCTCCTCGGAGCCCTCAAGGCCAAGCTACTTAATGACAAGGGAGAAGTCAGACTTCCTTCTCAATTATCTAATAATCATAGCTTAGTCTTCACGGGATTTGTAAACCCTAATAATAATCCTGGATTTTCAAGCACGTCTTCACCAAGCACAAGCAAAGGTGCGAAGAATATTCACACTGATAATAGTAGTAATATCTTCATCTCAGATCACCATCATGGGGTTCCTATAGCAGCAAATGATTCTTCGGTGCCCTTAATGAATTCATGGTCCAATAACAACGAGACAGGTAATAACTATGAATTGCCTTGGCCTACAGGTCCTACACAGATCATGAACCAAGTTCCTGAAAATAATAGTTTGTTTGCATCTTCAAGTAATTCTCCAATGTGGCCACTATCTGGGGTCAACGTTATTGATCAGTCTACGATGAGTATGATGTATTCTGACGTCGATGTGGGAGACAAGAATAACCTTATTAACATCGACCAGAGAGAACATGATTCAGATAGATCAGTAGTCTTAGGATACTCTGATTGTAATAACCAAAATATGATTATGTATTCTGATAATCATGGGGCTTCAAATAGCAGAAGTAATGCTCAAATTGGAGGATTCGCCGAAGGGTTATGGACAACAACAGATCATCAGCAGCAGCAAGTTCTTGTGCAGTGTGACAATAATGGTAGTTGGTTTAGTTCGAATAATAATGGTGCGTGGGATCCTTTGCTTTTTATGTCGTCTGAATTCGGTTGA 1119 0.4584 MAASAEENNRNMKGRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSFQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFDLPDPSAPGGGSGATQHGGSFSYKPENLEPFSFEDTGGDHDLLGALKAKLLNDKGEVRLPSQLSNNHSLVFTGFVNPNNNPGFSSTSSPSTSKGAKNIHTDNSSNIFISDHHHGVPIAANDSSVPLMNSWSNNNETGNNYELPWPTGPTQIMNQVPENNSLFASSSNSPMWPLSGVNVIDQSTMSMMYSDVDVGDKNNLINIDQREHDSDRSVVLGYSDCNNQNMIMYSDNHGASNSRSNAQIGGFAEGLWTTTDHQQQQVLVQCDNNGSWFSSNNNGAWDPLLFMSSEFG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1303g00004 372 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pral1303g00004 372 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 MobiDBLite consensus disorder prediction 1 31 - -
Pral1303g00004 372 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 SUPERFAMILY DNA-binding domain 26 82 IPR016177 GO:0003677
Pral1303g00004 372 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 FunFam ethylene-responsive transcription factor RAP2-11 24 83 - -
Pral1303g00004 372 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 MobiDBLite consensus disorder prediction 15 30 - -
Pral1303g00004 372 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 166 - -
Pral1303g00004 372 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pral1303g00004 372 MobiDBLite consensus disorder prediction 77 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1303g00004 Pral-Chr1303 35857 36975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1303g00004 7 81 AP2-EREBP Transcription Factor Family AT5G19790 64.474 3.01e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1303g00004 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1303g00004 - - pcin:129287300 397.127