Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1301g00012 ATGGACGAAGAAGGGTATATGCAAAAGCTCCGATCTAAAGCAACAGAGCTTCTCCTGAGAGAAGAATGGAAGGAATCCATCGAAGCGTATTCAAACTTCATCACTCTTTGCCAAAACCAAATCTTTCATACCCAAAACCATTCAGACTTAGATCAGCCTCAAAGGCTTCGAAAATCCCTCTGCTTAGCTTTTTCAAACAGAGCAGAAGCAAGATCAAGATTGAAAGAATTTCGTTCTGCGTTGGAAGATTGTGATTTAGCTTTGGGAATCGATGGGACCCATTTGAAGACTCTGATCTGCAAAGGTAAGATATTGCTCAATCTCAATATGTATTCTGTGGCTTTGGATTGTTTCAGAGTCGCTCTTCTTGATCCCCAAGCTAATGGGAACTCTGAAAACCTTAATGCGTATGTCGAGAAATGTAAAAAACTCGACGTTCTCTCCAGAACTGGAGCTCTAAACCTTTCCGATTGGGTTTCAAATGGGTTTCGAGGAAAGTCTCCAGAACTCGCAGAGTACATTGGTTCTGTGGAGATCATGAAATCTGAGATCAGTGGACGTGGGTTGTTTGCAACTAAGAACATCGATGGAGGGGGATTGGTTTTAGTCACAAAGGCAATAGCGATGGAAAGGAGTGTTCTTGGGGGGAAAGATCTGAGTGAGGAAGCTCAACTAGTGATGTGGAAGAATTTCATTGATAAAGTTGCAGACTTCGTTGGAAAATGTCGCAGAACGAGCAATTTGATCAGCAAATTGTCAAATGGGGAAGATGAAGATTCACTTGGGGTTCCTGATATAGGTCTCTTTAAACCAGGAACAGAGATGAAGAACAATCAACCCGGTGCGACGGAGAAGATTGATATGGGTAAGTTACTATCCATATTGGATGTGAATTCTCTAACCGAAGATGCTGTTTCAGCCAGTGTGTTAGGGAAGAAGAACAATGATTATTATGGTGTTGGGCTATGGATATTACCTTCCTTCATCAACCATTCATGCTGCCCCAATGCAAGGAGATTACACGTAGGAGACTATCTGATAGTTCATGCTTCTAAAGATATCAAAGCAGGTGAAGAAATAACCTTTGCCTATTTGGATCCACTTTCTTCATTGCACAAGCGCAAAGAGATGTCAATGACATGGGGAATCCAATGCAGATGTAAGAGATGTAAGTTTGAGTCAGAAATCATGTGCAAACAAGAGATGAGAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGAAGTGCAGTGTACAAATTAGAAGAAGAAATGAAGAGATGGAAAGTGAGAGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCGTATTCTGAGGTTTATAGGTCTGATAGGCTCATGAAGAGGTGGGGAAGGCGGATTCCGGCCATGGAAGCCGTGGTCTATAGCATCATAGATGTTATAGGAGGAGATGAGAGGCTACTTAAGATTCAAATGGAGGAGTTGAAGAAAAATGGAGGTGGTGGACTTGTGGAGATGGAGAAAGCTTTGAAGCTGGCAAGAGAAGTGTATGGGAAGGTGGTAAAAAAGCAGGCCATGAGGACTCTTCTTGAGCTTTGTGTTTCAACTAATGAATGA 1608 0.4223 MDEEGYMQKLRSKATELLLREEWKESIEAYSNFITLCQNQIFHTQNHSDLDQPQRLRKSLCLAFSNRAEARSRLKEFRSALEDCDLALGIDGTHLKTLICKGKILLNLNMYSVALDCFRVALLDPQANGNSENLNAYVEKCKKLDVLSRTGALNLSDWVSNGFRGKSPELAEYIGSVEIMKSEISGRGLFATKNIDGGGLVLVTKAIAMERSVLGGKDLSEEAQLVMWKNFIDKVADFVGKCRRTSNLISKLSNGEDEDSLGVPDIGLFKPGTEMKNNQPGATEKIDMGKLLSILDVNSLTEDAVSASVLGKKNNDYYGVGLWILPSFINHSCCPNARRLHVGDYLIVHASKDIKAGEEITFAYLDPLSSLHKRKEMSMTWGIQCRCKRCKFESEIMCKQEMREIEIGLERGMDVGSAVYKLEEEMKRWKVRGKEKAYLRASFWSAYSEVYRSDRLMKRWGRRIPAMEAVVYSIIDVIGGDERLLKIQMEELKKNGGGGLVEMEKALKLAREVYGKVVKKQAMRTLLELCVSTNE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1301g00012 535 CDD SET_SMYD 314 390 - -
Pral1301g00012 535 ProSiteProfiles SET domain profile. 175 365 IPR001214 GO:0005515
Pral1301g00012 535 Pfam SET domain 186 364 IPR001214 GO:0005515
Pral1301g00012 535 SMART tpr_5 7 40 IPR019734 GO:0005515
Pral1301g00012 535 SMART tpr_5 61 94 IPR019734 GO:0005515
Pral1301g00012 535 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 529 - -
Pral1301g00012 535 Gene3D Tetratricopeptide repeat domain 4 146 IPR011990 GO:0005515
Pral1301g00012 535 SUPERFAMILY SET domain 176 391 IPR046341 -
Pral1301g00012 535 SMART set_7 175 371 IPR001214 GO:0005515
Pral1301g00012 535 SUPERFAMILY TPR-like 8 123 IPR011990 GO:0005515
Pral1301g00012 535 Gene3D SET domain 273 421 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1301g00012 Pral-Chr1301 559124 560884 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral1301g00012 SET 6.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1301g00012 - - qsa:O6P43_025489 779.245