LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1301g00003	ATGGCTCACCTGGGGTTGCTTGTCGTAACGGCTTTTCTCTTGGTGGTTTCCTCCGCCCATGGATCCGGCGGCGGAGGGTGGACGGACGCCCACGCTACCTTTTATGGAGGAAGTGACGCTTCAGGGACAATGGGCGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGGGGTATGGGACCAACACGGCTGCTCTGAGCACTGCTCTGTTCAACAATGGCTTGAGCTGTGGTTCTTGCTTTGAGATTAAGTGTGCCAATGATGCTAAATGGTGCCTCCCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCTCCAACACTTTGACCTCGCCCAGCCCGTCTTCCTCCGCATCGCCCAGTACCGAGCCGGAATCGTCCCTGTGGCCTACCGAAGGGTACCCTGCAGGAGAAAGGGAGGTATGAGGTTCACAATCAATGGACACTCGTACTTCAACCTAGTCCTCATCACCAATGTGGGAGGCGCCGGAGATGTTCATGCGGTGGCCATTAAAGGGTCTAGGACCGGCTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACCACCTTAACGGACAAAGCCTGTCCTTTAAGGTCACAACCAGCGATGGTCGCACTGTAGTCTCTAACAACGTTGCTCCAGCAGGCTGGTCCTTTGGCCAAACCTTCACTGGCGCTCAGTTCAACTAA	753	0.5578	MAHLGLLVVTAFLLVVSSAHGSGGGGWTDAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCANDAKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVAYRRVPCRRKGGMRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWMPMSRNWGQNWQSNNHLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTFTGAQFN	250

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1301g00003	250	SMART	dpbb_1	62	147	IPR007112	-
	Pral1301g00003	250	SUPERFAMILY	Barwin-like endoglucanases	9	175	IPR036908	-
	Pral1301g00003	250	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	167	246	IPR007117	-
	Pral1301g00003	250	FunFam	Expansin	157	249	-	-
	Pral1301g00003	250	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	45	157	IPR007112	-
	Pral1301g00003	250	PANTHER	EXPANSIN-A15	7	249	IPR002963	GO:0009664
	Pral1301g00003	250	PRINTS	Expansin/Lol pI family signature	194	208	IPR007118	GO:0005576
	Pral1301g00003	250	PRINTS	Expansin/Lol pI family signature	44	62	IPR007118	GO:0005576
	Pral1301g00003	250	PRINTS	Expansin/Lol pI family signature	26	41	IPR007118	GO:0005576
	Pral1301g00003	250	PRINTS	Expansin/Lol pI family signature	140	156	IPR007118	GO:0005576

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1301g00003	Pral-Chr1301	300501	302289	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1301g00003	1	249	Expansin Gene Family	AT2G03090	80.876	1.04e-151	421

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1301g00003	-		-	gmx:100527059	457.988

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