Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1301g00003 ATGGCTCACCTGGGGTTGCTTGTCGTAACGGCTTTTCTCTTGGTGGTTTCCTCCGCCCATGGATCCGGCGGCGGAGGGTGGACGGACGCCCACGCTACCTTTTATGGAGGAAGTGACGCTTCAGGGACAATGGGCGGTGCTTGTGGGTACGGGAATCTGTACAGCCAGGGGTATGGGACCAACACGGCTGCTCTGAGCACTGCTCTGTTCAACAATGGCTTGAGCTGTGGTTCTTGCTTTGAGATTAAGTGTGCCAATGATGCTAAATGGTGCCTCCCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCCAACAATGCCGGCGGCTGGTGCAACCCTCCCCTCCAACACTTTGACCTCGCCCAGCCCGTCTTCCTCCGCATCGCCCAGTACCGAGCCGGAATCGTCCCTGTGGCCTACCGAAGGGTACCCTGCAGGAGAAAGGGAGGTATGAGGTTCACAATCAATGGACACTCGTACTTCAACCTAGTCCTCATCACCAATGTGGGAGGCGCCGGAGATGTTCATGCGGTGGCCATTAAAGGGTCTAGGACCGGCTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACCACCTTAACGGACAAAGCCTGTCCTTTAAGGTCACAACCAGCGATGGTCGCACTGTAGTCTCTAACAACGTTGCTCCAGCAGGCTGGTCCTTTGGCCAAACCTTCACTGGCGCTCAGTTCAACTAA 753 0.5578 MAHLGLLVVTAFLLVVSSAHGSGGGGWTDAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCANDAKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVAYRRVPCRRKGGMRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWMPMSRNWGQNWQSNNHLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTFTGAQFN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1301g00003 250 SMART dpbb_1 62 147 IPR007112 -
Pral1301g00003 250 SUPERFAMILY Barwin-like endoglucanases 9 175 IPR036908 -
Pral1301g00003 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Pral1301g00003 250 FunFam Expansin 157 249 - -
Pral1301g00003 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Pral1301g00003 250 PANTHER EXPANSIN-A15 7 249 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Pral1301g00003 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Pral1301g00003 250 FunFam Expansin 16 153 - -
Pral1301g00003 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Pral1301g00003 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Pral1301g00003 250 Gene3D - 14 153 IPR036908 -
Pral1301g00003 250 Gene3D - 157 249 IPR036749 -
Pral1301g00003 250 CDD DPBB_EXPA_N 27 152 - -
Pral1301g00003 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Pral1301g00003 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Pral1301g00003 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1301g00003 Pral-Chr1301 300501 302289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1301g00003 1 249 Expansin Gene Family AT2G03090 80.876 1.04e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1301g00003 - - gmx:100527059 457.988