Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1297g00002 ATGTCATCACTTCCAACGTCGGAGCAGTTTTCCACCGCAGAAAATGGCGCCAATACTACCAACAAAAGAAAGAGAAGACCCGCCGGAACACCAGATCCAGATGCGGAGGTGGTTTCGCTGTCGCCCAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGTAACCAGGGGTTTCAGAGAGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCATGGAAGCTGCTCAAGAGAGAGACGCCGGTGGTGAGGAAGAGGGTGTTTGTTTGCCCGGAGCCGACATGCTTGCACCATGACCCTTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTTCGCCGGAAGCATAGCAACCACAAGCAATGGGTCTGCCACCGCTGTTCTAAGGCCTACGCCGTCCAGTCCGATTACAAGGCACATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATCGAACACCAAGATGCGTGCAATATGGGGCGACTCCAGTCGGAGGGGCAGCCGCAGCAACCGGCGTGTCTATCTCGAACTGCATCGAGCCCCAGTCCGTCAAGCGAGACCAATTTCAGCGCCGGTCCGGCCTGGCCTCCACCTGGTCTGGTGATGACAAAGCCAAATGCGGAACCCACATTCTTGCAGAACAATAACCCTATTATTGCTCATCAAACCTCGTCCAAGACCAACCATCAAAACAACAAGCTCTACCCCAACCTGGACCTTCAGCTCTCAACCGCCACGCCGCCCAACGACGTCGCAAGAGACGACACCCATTCGACCCAGTTACAGCTCTCAATTGGGTCGTCGGACCTGAGCGACAAGAACGAATCAAATAGGACGAATTCATCACCAAAGGAGAGCAGTAACAGCAGCGATAAGCCGCCGGGTGCGGTGGCGGCGCTGATGGTGGAGAAGGCATACGCGGAGGAGGCAAGGAAAGAAGCCAAGAGACAGATGGAGGCGGCGGAGCAAGAGTTCGCGAACGCCAGGAGAATAAGACAGCAAGCTCAAGCTGAACTGGATAAAGCATTCGCTTTGAAAGAGCAAGCGATTAAGCAGATCAATTCAACTATGCTTCAGATCACATGTCAAGCTTGTAAGCAACAGTTTCACCAGCAAGCTCAAAAATTAATAACGGAAGGTGGCCAAGTATTAGACCACAACAACAACAACGGGAAAGAAAACCATCACTAA 1248 0.5377 MSSLPTSEQFSTAENGANTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLQSEGQPQQPACLSRTASSPSPSSETNFSAGPAWPPPGLVMTKPNAEPTFLQNNNPIIAHQTSSKTNHQNNKLYPNLDLQLSTATPPNDVARDDTHSTQLQLSIGSSDLSDKNESNRTNSSPKESSNSSDKPPGAVAALMVEKAYAEEARKEAKRQMEAAEQEFANARRIRQQAQAELDKAFALKEQAIKQINSTMLQITCQACKQQFHQQAQKLITEGGQVLDHNNNNGKENHH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1297g00002 415 FunFam protein indeterminate-domain 12-like 30 98 - -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 283 312 - -
Pral1297g00002 415 SUPERFAMILY beta-beta-alpha zinc fingers 48 74 IPR036236 -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 181 231 - -
Pral1297g00002 415 SMART c2h2final6 92 122 IPR013087 -
Pral1297g00002 415 SMART c2h2final6 51 73 IPR013087 -
Pral1297g00002 415 SMART c2h2final6 128 155 IPR013087 -
Pral1297g00002 415 Gene3D Classic Zinc Finger 29 91 - -
Pral1297g00002 415 Coils Coil 316 371 - -
Pral1297g00002 415 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Pral1297g00002 415 Gene3D Classic Zinc Finger 113 191 - -
Pral1297g00002 415 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 385 IPR031140 -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 181 210 - -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 1 38 - -
Pral1297g00002 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 1 18 - -
Pral1297g00002 415 MobiDBLite consensus disorder prediction 283 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1297g00002 Pral-Chr1297 31838 34590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1297g00002 14 392 C2H2 Transcription Factor Family AT2G01940 59.091 3.09e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1297g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1297g00002 K25871 - gmx:100800187 541.962