Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1295g00005 ATGGAGTCCGGCCGTATTTTCTTCGGTTCCTCCGCTTGCCGCGGGAACATGCTGTTTCTCGGGAACGGTGATCCAGTTTATAGAGGCGGATCGATAATAAGCATGGAGGAAAGCTCAAAGAAGCGACCATTTTTCAGCTCACCGGAGGAACTGTTCGACGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGACGCCTCACTCCCGAGCAGGTGCTTCTGCTGGAGAAAAGCTTTGAAGATGAGAACAAGCTGGAGCCGGAACGGAAGACCGAGCTGGCCAAGAAGCTGGGGTTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTATGATGCCCTGCTTTCAAAGTACAGCTCCATTGTCAAGGACAATGAAAATCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTGGCTAAAGAGATGCCACGAGAACCATTACCAGAAGAAAAGGCAGACCCACTTATGATGGAGCTAGCCCAAATGTCAACCCTGCCATTCAACGTGAAGGTGGAGGACCGACTCAGCAGTGGGAGTGGTGGAAGTGCAGTGGTGGACGAGGATGCTCCACAGCTTCTTGTGGACAGCGTTGATTCCTACTTTCCAGCTGAGAACTTTGATGGATGCGTGGCCAGCGTTGATAGGGTTCAGTCTGAGGAGGATGACGGCAGCGACAATGGTCGCAGTTACTTCTCTGATGTGTTTGTGGCCCCTGAACCTGAGCACCAAAACCATGAGGAGGGAGAGGCGTTGTGTTGGTGGGTGTGGTCTTAA 843 0.5184 MESGRIFFGSSACRGNMLFLGNGDPVYRGGSIISMEESSKKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKSFEDENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDALLSKYSSIVKDNENLKSEVVALNEKLLAKEMPREPLPEEKADPLMMELAQMSTLPFNVKVEDRLSSGSGGSAVVDEDAPQLLVDSVDSYFPAENFDGCVASVDRVQSEEDDGSDNGRSYFSDVFVAPEPEHQNHEEGEALCWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1295g00005 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Pral1295g00005 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Pral1295g00005 280 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Pral1295g00005 280 Coils Coil 139 159 - -
Pral1295g00005 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Pral1295g00005 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Pral1295g00005 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Pral1295g00005 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 203 IPR045224 GO:0003700
Pral1295g00005 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Pral1295g00005 280 Gene3D - 58 125 - -
Pral1295g00005 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Pral1295g00005 280 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Pral1295g00005 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1295g00005 Pral-Chr1295 29820 32350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1295g00005 1 279 Homeobox Transcription Factor Family AT3G01470 60.900 1.35e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1295g00005 Homeodomain 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1295g00005 K09338 - qsa:O6P43_008987 417.157