Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1295g00004 ATGGAGTCCGGCCGTATTTTCTTCGGTTCCTCCGCTTGCCGCGGGAACATGCTGTTTCTCGGGAACGGTGATCCAGTTTATAGAGCAGGCGGATCGATAATAAGCATGGAGGAAAGCTCAAAGAAGCGACCATTTTTCAGCTCACCGGAGGAACTGTTCGACGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGACGCCTCACTCCCGAGCAGGTGCTTCTGCTGGAGAAAAGCTTTGAAGATGAGAACAAGCTGGAGCCGGAACGGAAGACCGAGCTGGCCAAGAAGCTGGGGTTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTATGATGCCCTGCTTTCAAAGTACAGCTCCATTGTCAAGGACAATGAAAATCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTGGCTAAAGAGATGCCACGAGAACCATTACCAGAAGAAAAGGCAGACCCACTTATGATGGAGCTAGCCCAAATGTCAACCCTGCCATTCAACGTGAAGGTGGAGGACCGACTCAGCAGTGGGAGTGGTGGAAGTGCAGTGGTGGACGAGGATGCTCCACAGCTTCTTGTGGACAGCGTTGATTCCTACTTTCCAGCTGAGAACTTTGATGGATGCGTGGCCAGCGTTGATAGGGTTCAGTCTGAGGAGGATGACGGCAGCGACAATGGTCGCAGTTACTTCTCTGATGTGTTTGTGGCCCCTGAACCTGAGCACCAAAACCATGAGGAGGGAGAGGCGTTGTGTTGGTGGGTGTGGTCTTAA 846 0.5189 MESGRIFFGSSACRGNMLFLGNGDPVYRAGGSIISMEESSKKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKSFEDENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDALLSKYSSIVKDNENLKSEVVALNEKLLAKEMPREPLPEEKADPLMMELAQMSTLPFNVKVEDRLSSGSGGSAVVDEDAPQLLVDSVDSYFPAENFDGCVASVDRVQSEEDDGSDNGRSYFSDVFVAPEPEHQNHEEGEALCWWVWS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1295g00004 281 Gene3D - 59 126 - -
Pral1295g00004 281 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Pral1295g00004 281 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Pral1295g00004 281 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Pral1295g00004 281 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pral1295g00004 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 204 IPR045224 GO:0003700
Pral1295g00004 281 CDD homeodomain 65 121 IPR001356 GO:0003677
Pral1295g00004 281 Coils Coil 140 160 - -
Pral1295g00004 281 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Pral1295g00004 281 SMART HOX_1 63 124 IPR001356 GO:0003677
Pral1295g00004 281 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Pral1295g00004 281 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pral1295g00004 281 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1295g00004 Pral-Chr1295 29820 32351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1295g00004 1 280 Homeobox Transcription Factor Family AT3G01470 60.900 6.65e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1295g00004 Homeodomain 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1295g00004 K09338 - qsa:O6P43_008987 418.698