Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1288g00015 ATGACGAAACGGTTCATAGGGGTCCGTCAGAGGCCGTCCGGACGATGGGTCGCCGAGATCAAGGACTCTGCTCAGCACGTCCGGCTTTGGCTCGGAACCTACGACACCCCAGAGGAGGCCGCCCAAGCCTACGACGAGGCAGCCCGGGCCCTCCGCGGAGACAACGCCCGAACCAACTTCGTGTCCGCCGCCGCCGCCGCCACTAGCGAGGGCCTATCGAAGCAAAGTGGACTGAGTTTTGCTTCTCTGAAAGCCAGGTTGAGCAAGAATCTTCAGGGCATAATGGCTAGGTCAAGCGATGGTAGTAGCAGTAATAAACCATCCAAGAGCAGGGTAACTGACCATTTTACCCTCGCTAGCATATTCCACAGAAGGGCTAGTTCTGACTACGGAAACTACGAGTTCAACCAAATCCCTAATGATATGGTGGAGAAAGTGGTGCAGCCCAGCATAATAGTGCCGCCTGTAGGAGATCAACCGGGTGCGGTTACTTCCTGGGAGAGCTCAAGCAGCTCCGAGTGGTTCGGGTTCCGGCAGCCTGGTTTGGACTCTGACGGTTCAGATGCCGGCGGGGAGCAGTTAGGGCTTAGTTTGGAGCAGCTGTTGGGGTGGGTGGATAGTCCGGATCATGGTAATAATAACGTGTATGGAAGCGATGAACAAGATGAGGGATCAAGGAGCAAGAGGTTTAAGGTTTCTTCTTCAGTTCTTGTGCCTCCAACTTTCAGTGAGTCCCCAAATAACAGTGATTTTGGGTCGCCTTACAGTGCTTATGAATCTCCATATAATGGTATTGGCGGCAACTGA 807 0.5378 MTKRFIGVRQRPSGRWVAEIKDSAQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVSAAAAATSEGLSKQSGLSFASLKARLSKNLQGIMARSSDGSSSNKPSKSRVTDHFTLASIFHRRASSDYGNYEFNQIPNDMVEKVVQPSIIVPPVGDQPGAVTSWESSSSSEWFGFRQPGLDSDGSDAGGEQLGLSLEQLLGWVDSPDHGNNNVYGSDEQDEGSRSKRFKVSSSVLVPPTFSESPNNSDFGSPYSAYESPYNGIGGN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1288g00015 268 MobiDBLite consensus disorder prediction 230 256 - -
Pral1288g00015 268 FunFam ethylene-responsive transcription factor RAP2-11 3 62 - -
Pral1288g00015 268 SUPERFAMILY DNA-binding domain 4 60 IPR016177 GO:0003677
Pral1288g00015 268 Gene3D AP2/ERF domain 3 62 IPR036955 GO:0003700|GO:0006355
Pral1288g00015 268 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Pral1288g00015 268 CDD AP2 3 60 IPR001471 GO:0003700|GO:0006355
Pral1288g00015 268 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Pral1288g00015 268 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Pral1288g00015 268 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Pral1288g00015 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 158 - -
Pral1288g00015 268 MobiDBLite consensus disorder prediction 208 268 - -
Pral1288g00015 268 Pfam AP2 domain 4 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1288g00015 Pral-Chr1288 38425 39231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1288g00015 4 62 AP2-EREBP Transcription Factor Family AT5G19790 69.492 6.30e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1288g00015 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1288g00015 K09286 - pcin:129290888 307.375