Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1287g00004 ATGGCAAGTTTGAATTTGAGGGAGACGGAGCTGTGTCTGGGGTTACCCGGCGGTGTCGGTGGCGAGGCGGTGGAAGCCGCCGTCACTCCAAAGGCCTCTGGTAACAAGAGAGCTTTCTCCGCAACTGTTGATCTGAAGCTCAACCTCGCCGCCGATGATTCCAAGGATGCCGCCGGCGAAGAAGAAGAAGATCTCACCAATCAGAACCACAAGAACATCGCCTCCTCTAACAAGAACCCAACCAAGCCACCCGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGGCACAGAAGGTGAGCAGCGAAGATGGGAATACTGAGGAGAAGACGGCGGCGCCGCCAGCTCTGGCGACTGTCGGAGGATCACTTGTGAAGGTGTGTATGGATGGTGCACCTTACCTTAGGAAGGTGGATTTGAAGATGTACAAAAGCTACCAACAACTTTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGGAAGTATGAGGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCTGAACAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGACGGTGATTGGATGCTCGTTGGCGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGTCTCCGAATAATGAAAGGATCAGAAGCTATTGGACTTGCCCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGA 747 0.5167 MASLNLRETELCLGLPGGVGGEAVEAAVTPKASGNKRAFSATVDLKLNLAADDSKDAAGEEEEDLTNQNHKNIASSNKNPTKPPAKAQVVGWPPVRSYRKNVMAQKVSSEDGNTEEKTAAPPALATVGGSLVKVCMDGAPYLRKVDLKMYKSYQQLSDALAKMFSSFTMGKYEGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1287g00004 248 SUPERFAMILY CAD & PB1 domains 129 229 - -
Pral1287g00004 248 Gene3D - 125 242 - -
Pral1287g00004 248 FunFam Auxin-responsive protein 125 240 - -
Pral1287g00004 248 Pfam AUX/IAA family 8 239 IPR033389 -
Pral1287g00004 248 MobiDBLite consensus disorder prediction 69 83 - -
Pral1287g00004 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 235 IPR003311 GO:0005634|GO:0006355
Pral1287g00004 248 MobiDBLite consensus disorder prediction 54 68 - -
Pral1287g00004 248 ProSiteProfiles PB1 domain profile. 129 230 IPR000270 GO:0005515
Pral1287g00004 248 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1287g00004 Pral-Chr1287 56489 59244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1287g00004 130 238 B3 DNA Binding Superfamily AT4G23980 32.110 2.25e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral1287g00004 AUX_IAA 2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1287g00004 K14484 - mnt:21399382 318.161