Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1287g00003 ATGAGGAATAAAACACAATCCTCCATTTTCATTTCTTCCCACAGTTTCGTCTTCAAGCTTCAAGCTTCTTCAGCAGCCTGTTCTCTTAACCATAAAAGGTTCGAGCTCGGTTGGTTTCTCTGGGCATTGATTGATTTTCTTCGCTGGGATTTCTGGGTTTTAGCTAGAGAGATGGAAAACAAAGTGGCTTTTGAGAGTGATCTCAATCTCAAGGATACAGAGCTCAGATTGGGGCTGCCAGGAAGGGAAGAACAAAAATCAGTGGTTAGTTCTAAGAACAACAACAAGAGGCCTTTATCTGAAGCTTCTGAGGATTGTGGAACAAAGGGTTCTAATGAATCAGCCCCTCCAGCCAAGGCAAAGATTGTGGGGTGGCCACCAATCAGATCTTACAGGAAGAACAGCTTACAGGAGGGTGACGCTTCTGGGATTTATGTGAAAGTGAGTATGGATGGCGCTCCATACCTCAGAAAGATTGATTTGAAGGTTTACGATGGCTATCCAGAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTAACCATAGGTCAGTACAATGAAAGAGAGGGTTACAAAGGGTCAGAATTTGCACCTACATATGAGGACAAGGATGGTGACTTGATGCTTGTTGGAGATGTTCCATGGGACATGTTCAGGACTTCCTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGATTGGGTTGTGGAGTATGA 723 0.4329 MRNKTQSSIFISSHSFVFKLQASSAACSLNHKRFELGWFLWALIDFLRWDFWVLAREMENKVAFESDLNLKDTELRLGLPGREEQKSVVSSKNNNKRPLSEASEDCGTKGSNESAPPAKAKIVGWPPIRSYRKNSLQEGDASGIYVKVSMDGAPYLRKIDLKVYDGYPELLKALENMFKLTIGQYNEREGYKGSEFAPTYEDKDGDLMLVGDVPWDMFRTSCKRLRIMKGSEARGLGCGV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1287g00003 240 FunFam Auxin-responsive protein 138 240 - -
Pral1287g00003 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 234 IPR003311 GO:0005634|GO:0006355
Pral1287g00003 240 Gene3D - 137 240 - -
Pral1287g00003 240 SUPERFAMILY CAD & PB1 domains 134 229 - -
Pral1287g00003 240 MobiDBLite consensus disorder prediction 82 120 - -
Pral1287g00003 240 ProSiteProfiles PB1 domain profile. 143 230 IPR000270 GO:0005515
Pral1287g00003 240 Pfam AUX/IAA family 104 237 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1287g00003 Pral-Chr1287 22393 40903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1287g00003 146 239 B3 DNA Binding Superfamily AT4G23980 34.043 3.48e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral1287g00003 AUX_IAA 2.8e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1287g00003 K14484 - qsu:112011057 289.656