Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1285g00006 ATGTCCAGAAGCAGTAGCAGTGAGAGTAAGAGTTGTAACAGAGGCCATTGGAGACCAGCTGAAGATGAGAGACTGAAACAGCTTGTGGAGCAGTACGGTCCTCAGAACTGGAATTTCATTGCGGAACATCTTGATGGGAGATCAGGGAAAAGTTGCAGGTTGAGGTGGTACAACCAACTAGACCCAAACATAGTAAAAAGGCCATTCACAGAGGAGGAGGAGGAAATACTGCTAGCTCTTCACAAGGTAAAAGGAAACAAATGGGCTGCAATTTCAAGGTTCTTGCCCGGAAGAACTGATAATGCTGTCAAGAATCACTTCCATGTCCTTATGGCAAGGAGAAAGAGAGAACGTTACACGCTCTTTGGCGACCGAAGCGGCAATTACACTAGTATTAATCATAATCATATTCCTATAATTGACTCAACCTCGCAAAGGCCTACCTCAGGGATTAATAACTTCACCTTCCAAAACAGCAGAAACCTGGGCATCTTCGATATCACTTCCTCACATTCATTAGGACTGAATCCTTGGAATGCTCGAAGTGATTCCTCGACCATCTCGTCAGAGTTACTGAGTTTTGAAGCTCCTGATGCTTCTAAGCCTCACATCGATCACTTTAATGCCTCAAGTTCAGCTGCTTCTTGTTCGCTTGGCAGTTACAGTAGTTTTACTGCCCCAGGAATTCCCAGTATTGGAAGGGTCGTTCCTCTTCCTCAGAGGTTCTCAAAGTCCTATTTTGCCCAAAGAACTGAGGATTATTCCATCAAAGGCATGCCAGACAAGACAACTCTGGAAGAACAAGTTGAAAAGCTTAAAGGTGTTTCCTTTATAGACTTTCTTGGTGTGGGAAGTTGTTCTGCCAGCGACAGTTGA 876 0.4441 MSRSSSSESKSCNRGHWRPAEDERLKQLVEQYGPQNWNFIAEHLDGRSGKSCRLRWYNQLDPNIVKRPFTEEEEEILLALHKVKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERYTLFGDRSGNYTSINHNHIPIIDSTSQRPTSGINNFTFQNSRNLGIFDITSSHSLGLNPWNARSDSSTISSELLSFEAPDASKPHIDHFNASSSAASCSLGSYSSFTAPGIPSIGRVVPLPQRFSKSYFAQRTEDYSIKGMPDKTTLEEQVEKLKGVSFIDFLGVGSCSASDS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1285g00006 291 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Pral1285g00006 291 CDD SANT 76 111 IPR001005 -
Pral1285g00006 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pral1285g00006 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Pral1285g00006 291 Gene3D - 14 65 - -
Pral1285g00006 291 PANTHER MYB PROTEIN-RELATED 14 183 - -
Pral1285g00006 291 SMART sant 65 113 IPR001005 -
Pral1285g00006 291 SMART sant 13 62 IPR001005 -
Pral1285g00006 291 CDD SANT 17 58 IPR001005 -
Pral1285g00006 291 FunFam MYB transcription factor 14 65 - -
Pral1285g00006 291 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pral1285g00006 291 Gene3D - 67 126 - -
Pral1285g00006 291 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pral1285g00006 291 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Pral1285g00006 291 SUPERFAMILY Homeodomain-like 13 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1285g00006 Pral-Chr1285 23424 24552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1285g00006 1 287 MYB Transcription Factor Family AT4G33450 43.434 6.72e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1285g00006 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1285g00006 K09422 - vvi:100253993 219.55